PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00324g08011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARF | ||||||||
Protein Properties | Length: 899aa MW: 99710.5 Da PI: 6.4776 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.2e-24 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+ Peinf101Scf00324g08011.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 211 99*****************************97677775.9******************************************** PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F ++++ +l+++++r Peinf101Scf00324g08011.1 212 VIFI--WNEKNQLFLGIRR 228 ****..8889999999998 PP | |||||||
2 | Auxin_resp | 120.1 | 1.8e-39 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+s+Fv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sd+dpvrWpnS+Wrs+k Peinf101Scf00324g08011.1 254 AAHAAATNSRFTIFYNPRASPSDFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDFDPVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-41 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.28E-22 | 127 | 223 | No hit | No description |
PROSITE profile | PS50863 | 11.956 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-22 | 128 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-22 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-34 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.83E-6 | 766 | 841 | No hit | No description |
PROSITE profile | PS51745 | 23.346 | 766 | 850 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 899 aa Download sequence Send to blast |
MRISSAGFSQ QSPEGEKKCL NSELWHACAG PLVSLPALGS RVVYFPQGHS EQVAASTNKE 60 VDAHTPNHPS LNPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKEA SFLPVDLGIP 120 NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPCQELIA RDLHDNEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLFLGIRRAF RPQTVMPSSV 240 LSSDSMHLGL LAAAAHAAAT NSRFTIFYNP RASPSDFVIP LAKYVKAVYH TRISVGMRFR 300 MLFETEESSV RRYMGTITGI SDFDPVRWPN SHWRSVKVGW DESMAGERQP RVSLWEIEPL 360 TTFPMYPSQF PLRLKRPWPQ GLPVLNGMKD DDMVVNTPVM WLRDVGDRGM HSIDFQGMGG 420 TPWMQPRIDV PMFGMQPDIY QAMAAAAALQ EIRAMDPSKQ ALSSLLQLQQ ANVVTTSPAG 480 LLNSQFLQQS QPQTAFFHSV VEGQSQAQAI SEPHSIQKQL QHQISFNNIQ QQHRQSPQQQ 540 QTPLQQQQAI SQQVSSVSSF MNQLGSNSHS QQPSLQSFCS MQQESFSDPK VNPSTNPLHS 600 LMGAVPQDEA SHFLSVPRSS SLLSPNGWPP KRIAVDPVNP SAISQCISPQ VDQLGTPSKN 660 ISQNSLSLPP FPGRGCSIDG NNDPHNHLLF GVNIDSPSLL MSNGMPNLRG VGSDCESTNV 720 PFASSNYMSN TGTDFSQNPV MASSGCIDES GFVQTFENAG EEGAHNTFVK VYKTGSFGRS 780 LDITKFNSYH ELRSELARMF GLEGLLEDPL RSGWQLVFVD RENDVLLLGD DPWPEFVSSV 840 WCIKILSPQE VQQMGKQGLE LLKSVSMSKL SNGIYDDFVN HPESRNITSG ITCIGALDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-156 | 16 | 358 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627654.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X3 | ||||
Refseq | XP_016449913.1 | 0.0 | PREDICTED: auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A1S3YD38 | 0.0 | A0A1S3YD38_TOBAC; Auxin response factor | ||||
STRING | XP_009797608.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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