PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00317g04018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 334aa MW: 37082.5 Da PI: 9.877

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00317g04018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.9	1.5e-30	16	91	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Peinf101Scf00317g04018.1 16 IGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENMRSIGLKKTLVFYTGKAPKGIRTSWIMNEYRL 91 4789**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.025	1	112	IPR003441	NAC domain
SuperFamily	SSF101941	1.24E-34	15	112	IPR003441	NAC domain
Pfam	PF02365	3.7E-13	19	91	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
SITWFFLLVC KALAAIGEKE WYFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRSENM 60 RSIGLKKTLV FYTGKAPKGI RTSWIMNEYR LPQHETERLQ KAEISLCRVY KRPGIEDHPS 120 LPRSLPTTRA SSSSSSRGAT SIKKQQHHRS QAVLQADSLI SPYNVGQSSQ QIDEKLSETT 180 SASSITSTDH HHQHVITSLG LNSLQNSYNN IVLDPMVAVT SSSSSLAPFT SLVSPSSAGV 240 GVDDLHKLIN FTGQSVSNNE FSLTTSYGGS SNHNYPINHP AVAAPFLQPQ LVPTLQPQTN 300 LLLQAGSLQL SAYSDRLWEW NSINNQTDGN NPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	14	112	66	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	14	112	66	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	14	112	66	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	14	112	66	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-35	14	112	66	165	NAC domain-containing protein 19
4dul_B	2e-35	14	112	66	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238508	2e-90	AC238508.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-43d23 map 1, complete sequence.
GenBank	AC246255	2e-90	AC246255.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-65j3 map 1, complete sequence.
GenBank	HG975440	2e-90	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	2e-90	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491977.1	1e-136	PREDICTED: NAC transcription factor 25-like isoform X2
TrEMBL	A0A1S4BSW2	1e-135	A0A1S4BSW2_TOBAC; NAC transcription factor 25-like isoform X2
STRING	XP_009626107.1	1e-134	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	8e-70	NAC domain containing protein 35