PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00302g04018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 446aa    MW: 48621.7 Da    PI: 4.7533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00302g04018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-184996148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT  Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Peinf101Scf00302g04018.1 49 KGPWTSAEDAILVDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 96
                              79******************************************9986 PP
2Myb_DNA-binding24.18.5e-08102130130
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                               +g++T+eE+ +++++++++G++ W++ a++
  Peinf101Scf00302g04018.1 102 KGAFTPEEERRIIELHAKMGNK-WARMAAE 130
                               799*******************.**99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.78344100IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-234799IPR009057Homeodomain-like
SMARTSM007173.3E-134898IPR001005SANT/Myb domain
PfamPF002495.1E-154996IPR001005SANT/Myb domain
SuperFamilySSF466892.7E-2450126IPR009057Homeodomain-like
CDDcd001675.55E-115196No hitNo description
PROSITE profilePS500906.41197140IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-13100130IPR009057Homeodomain-like
SMARTSM007174.1101138IPR001005SANT/Myb domain
PfamPF002491.1E-6102130IPR001005SANT/Myb domain
CDDcd001670.00426104130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNDVTHFGHD MSMSSESDDM MTSKVGVDSP SVEEACGGGN TGGGLPLKKG PWTSAEDAIL  60
VDYVTKHGEG NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM  120
GNKWARMAAE AISESKQNED LGTFSTDGQY SDFLPVNNYE IPAVEFKKLE FNEPLCPPSL  180
LDIPAGSLLD IPARSLLAQG LNSAYYSRSF LSTMHPSKRI RGSESLFSAL NGDSSPLKNE  240
DSFPTCHQYQ NDGTLLAQSL GFSSPYNQNP TSDHHPSSLG VIPGSHAPLN GNSSSSEPSW  300
AKKLELPSLQ SQMASWGLPP SPLPSLESVD TMIQSPPTEH TESCNLSPRN SGLLDAVLYE  360
SQTMRASKSN LHQENSGDGA DDSCPDLHET EWEAYGDPIS PLGHSAASVK QEKFDGKDDT  420
LNPFFSRPDY LLESNCFSPM QSEDRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2044128185B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484620.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_016484621.10.0PREDICTED: transcription factor GAMYB-like isoform X2
TrEMBLA0A4D6FEJ60.0A0A4D6FEJ6_PETHY; MYB33a
STRINGXP_009786742.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-54myb domain protein 33