PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00301g04018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

GRAS

Protein Properties

Length: 748aa MW: 84598.2 Da PI: 6.1258

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00301g04018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	340	4.2e-104	390	740	1	353
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lL++cA+av+++d + a++lL+++++++s gd +qRla++f+ +L+arla+++s++ kal ++ts ++ l+a++l+ Peinf101Scf00301g04018.1 390 LRTLLITCAQAVAADDCRSANELLKQIRQHSSLFGDGNQRLAHCFADGLEARLAGTGSQIHKALVNKRTS---AADFLKAYHLYL 471 6789**********************************************************999998...9******* PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 +P+ k+s ++ N++I+ + +++rvH+iDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rL+++ Peinf101Scf00301g04018.1 472 ASCPFRKMSGFASNKTIMMKAGNATRVHVIDFGILYGFQWPTLIQRIAAREGGPPKLRITGIEFPQPGfrPAEKIEETGRRLSDY 556 ***************************************************************9************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 A++++vpfe+++ +ak++e+++le+L++++++ l+Vn+ ++ ++l+de+v es r+ vL+l+++++P+++++ + ++++ F Peinf101Scf00301g04018.1 557 AKSFDVPFEYHA-IAKKWETIRLEDLKLEKDDFLVVNCLYRFKNLHDETVLAESSRTLVLNLIRKINPDIFIHGIVNGAYSAPFF 640 ********.7******************************************************************* PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ++rf eal ++salfd+lea++pre er+ +Ere++gre+ nv+aceg er+er et+++W+ r +a F+++p++ ++++ a Peinf101Scf00301g04018.1 641 VTRFREALFHFSALFDMLEANVPREYPERMLIEREIFGREALNVIACEGWERVERPETYKQWQVRNLRARFTQIPFEREVMNMAI 725 *******************************************************************************9998 PP GRAS 339 lllrkvksdgyrvee 353 l+ + + +++ Peinf101Scf00301g04018.1 726 EKLAIYIFGEFNSTA 740 888777655566555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.077	364	741	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-101	390	740	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MDPRFNRLPS SVNGFNLEKQ SLPVFSDHWK NNEPRFEAIY QDQKLVNGPR FENSFVQHNV 60 SRVQSLSNEP LPSNTTLTSD TGDDYNEDFD FSDTVLSYIN EMLMEEDMED KTHMLQESLE 120 LQTKEKSFYE ALGKKYPPSP QQNLSVTNQN CEIPDDYCSG SLYKSTINSS DSSGYLIDPS 180 VVNNSNDYNF SYVQSLSVCD GTYSSISSSS SLTNIADGFL DSPVSPLHTP DIYNESHPIW 240 NFRKGVEEAN KFLPTTNNLL DNVDINDLLA LEQKEESGCV VAQVGKRGEG ETSVSGPRGR 300 KNAHRDDTDL EQERSSKQAA VYTESTVRSE EFDLVLLHSM GKGREALAAL RETLKNARTK 360 TTMQNGQSKG FTGGKARGKK QNGKKEVVDL RTLLITCAQA VAADDCRSAN ELLKQIRQHS 420 SLFGDGNQRL AHCFADGLEA RLAGTGSQIH KALVNKRTSA ADFLKAYHLY LASCPFRKMS 480 GFASNKTIMM KAGNATRVHV IDFGILYGFQ WPTLIQRIAA REGGPPKLRI TGIEFPQPGF 540 RPAEKIEETG RRLSDYAKSF DVPFEYHAIA KKWETIRLED LKLEKDDFLV VNCLYRFKNL 600 HDETVLAESS RTLVLNLIRK INPDIFIHGI VNGAYSAPFF VTRFREALFH FSALFDMLEA 660 NVPREYPERM LIEREIFGRE ALNVIACEGW ERVERPETYK QWQVRNLRAR FTQIPFEREV 720 MNMAIEKLAI YIFGEFNSTA VTGKLTLL

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MDPRFNRLPS SVNGFNLEKQ SLPVFSDHWK NNEPRFEAIY QDQKLVNGPR FENSFVQHNV  60
SRVQSLSNEP LPSNTTLTSD TGDDYNEDFD FSDTVLSYIN EMLMEEDMED KTHMLQESLE  120
LQTKEKSFYE ALGKKYPPSP QQNLSVTNQN CEIPDDYCSG SLYKSTINSS DSSGYLIDPS  180
VVNNSNDYNF SYVQSLSVCD GTYSSISSSS SLTNIADGFL DSPVSPLHTP DIYNESHPIW  240
NFRKGVEEAN KFLPTTNNLL DNVDINDLLA LEQKEESGCV VAQVGKRGEG ETSVSGPRGR  300
KNAHRDDTDL EQERSSKQAA VYTESTVRSE EFDLVLLHSM GKGREALAAL RETLKNARTK  360
TTMQNGQSKG FTGGKARGKK QNGKKEVVDL RTLLITCAQA VAADDCRSAN ELLKQIRQHS  420
SLFGDGNQRL AHCFADGLEA RLAGTGSQIH KALVNKRTSA ADFLKAYHLY LASCPFRKMS  480
GFASNKTIMM KAGNATRVHV IDFGILYGFQ WPTLIQRIAA REGGPPKLRI TGIEFPQPGF  540
RPAEKIEETG RRLSDYAKSF DVPFEYHAIA KKWETIRLED LKLEKDDFLV VNCLYRFKNL  600
HDETVLAESS RTLVLNLIRK INPDIFIHGI VNGAYSAPFF VTRFREALFH FSALFDMLEA  660
NVPREYPERM LIEREIFGRE ALNVIACEGW ERVERPETYK QWQVRNLRAR FTQIPFEREV  720
MNMAIEKLAI YIFGEFNSTA VTGKLTLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-45	394	716	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804922.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1U7YLH5	0.0	A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRING	XP_009804922.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein