PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00301g04010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 470aa    MW: 53673.4 Da    PI: 7.8369
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00301g04010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.94.9e-1011064422340
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                 lL++cA+av+++d + a+ lL+++++++sp gd +qRla +ft +L+arl+++++++ykal  ++ts    ++ l+a++l+  
  Peinf101Scf00301g04010.1 106 SALLISCAQAVAAEDCRGANDLLKQIRQHSSPFGDGNQRLANCFTDGLEARLVGTGNHIYKALVDKRTS---ADDILKAYHLYLS 187
                               579************************************************************999998...99*********** PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                +P+ k+s+++ N++I+  +e++++vHiiDf+i +G+QWpa++q +a R++gpp+lRiTg++ p++g   +e++eetg+rLa +A
  Peinf101Scf00301g04010.1 188 SCPYSKISNFVSNKTIMTKAEKATKVHIIDFGILYGFQWPAFIQHIAFREGGPPKLRITGIEFPQPGfrPAERIEETGRRLAAYA 272
                               ******************************************************************9****************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               +++++ fe+++ +ak++e+++le+L+++++E l+Vn++++l++l+des+  es r+ vL+l+++++P+++++   +  ++++ F+
  Peinf101Scf00301g04010.1 273 QRFNILFEYHA-IAKKWETISLEDLDLESDEFLVVNCMYRLKNLHDESGLGESSRTIVLNLIRKINPDIFIHGIVNGTYSAPFFV 356
                               ***********.7************************************************************************ PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +rf   l ++salfd le+ +pre  er+++Ere++g e+ nv+aceg er+er et+++W+ r ++a F+++p++ ++ + a  
  Peinf101Scf00301g04010.1 357 TRFKAVLFHFSALFDILETVVPREIPERMVIEREIFGMEALNVIACEGCERVERPETYRQWQGRNRRARFTQIPFEREIINRAIE 441
                               ***************************************************************************9998887755 PP

                      GRAS 340 l 340
                                
  Peinf101Scf00301g04010.1 442 K 442
                               5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.1379456IPR005202Transcription factor GRAS
PfamPF035141.7E-98106442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEPKFNLNEF PLENDLLPNS SDLLKSNELR FGAIDPDQNL VNSSRLENTT SKQAAVYAES  60
TTLSEEFDIV LLHSMEKRAE ATEAYRKSLK NASSVPTDKK DVKDLSALLI SCAQAVAAED  120
CRGANDLLKQ IRQHSSPFGD GNQRLANCFT DGLEARLVGT GNHIYKALVD KRTSADDILK  180
AYHLYLSSCP YSKISNFVSN KTIMTKAEKA TKVHIIDFGI LYGFQWPAFI QHIAFREGGP  240
PKLRITGIEF PQPGFRPAER IEETGRRLAA YAQRFNILFE YHAIAKKWET ISLEDLDLES  300
DEFLVVNCMY RLKNLHDESG LGESSRTIVL NLIRKINPDI FIHGIVNGTY SAPFFVTRFK  360
AVLFHFSALF DILETVVPRE IPERMVIERE IFGMEALNVI ACEGCERVER PETYRQWQGR  420
NRRARFTQIP FEREIINRAI EKIRPLKEHN VSNLIQKVKR VVPFLQFPKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-481094318328GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622916.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_009622917.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809331e-158SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1S4BNC50.0A0A1S4BNC5_TOBAC; scarecrow-like protein 9
TrEMBLA0A1U7YLH50.0A0A1U7YLH5_NICSY; scarecrow-like protein 9
STRINGXP_009622916.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-153GRAS family protein