PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00293g04013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 698aa    MW: 78202.1 Da    PI: 6.8827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00293g04013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192777656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++++eq+++Le++F+++++p++++r++L++ +gL+ +q+k+WFqN+R++ k
  Peinf101Scf00293g04013.1 27 RHSAEQIQQLEAFFKECPHPDENQRRQLSMDIGLDPKQIKFWFQNKRTQTK 77
                              5799********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-19973IPR009057Homeodomain-like
SuperFamilySSF466891.24E-17979IPR009057Homeodomain-like
PROSITE profilePS5007115.8231979IPR001356Homeobox domain
SMARTSM003891.8E-161983IPR001356Homeobox domain
CDDcd000866.73E-162679No hitNo description
PfamPF000461.5E-162777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084839.109206440IPR002913START domain
CDDcd088754.46E-87210436No hitNo description
SuperFamilySSF559616.59E-28210438No hitNo description
SMARTSM002341.2E-28215437IPR002913START domain
PfamPF018526.9E-34217437IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-10217403IPR023393START-like domain
SuperFamilySSF559615.36E-13459660No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MADSGDEHVG ESSSSRKRSK KQKLCHRHSA EQIQQLEAFF KECPHPDENQ RRQLSMDIGL  60
DPKQIKFWFQ NKRTQTKNMA MREALKNIIC PHCDGPPIGE EERKRNFEKL KLANQRLRDE  120
HERISNLISS FVGRSFVTTS QLAPPQSTLG SLSSASTEES LVSQNIGGSP IIDHQENVGG  180
TNSINTNPSA TIIPSHGMNN EIHYEIDRAK TKIFETALSA MDEVVELLQV NEPFWMKSPC  240
DGRYVIHHDT YEKIFPKSYP PYKSSTARIE SSKDSGVVPM TAIELIQIFL DPIKWMSMFP  300
TIVTKARTIE VVDTGNFGGS LQLMYEKVHI LSPLVGSRDF FFIRCCRQLD PTTWIMSDVS  360
YEIFKEIQNG GPSQSWKFPS GCIIQELGNG KSKVTWLEHV QVDDRSQTHR IYRDLVCGRQ  420
TYGAKRWIVT LQRMCERHNI AIGPKCPTRH DLEGVIDAPD GKKNVTQISL RMVKSFCENL  480
SMADKLDFPQ LSDVNTSGVR ISFRKNEDPS QPKGLIVSAA TSLWLPLSFE TVFDFLKDEK  540
TRPQWDVLTN GNHVNELAKI PAGTFPGNCI SIIQPFVEKE SNMLMLQETS IDPMGAFLIY  600
APVDLPTVTS IISGDDTSKI PILPSGFIIS PDGRLATDKD NMGNTSTGSL LTVAFQILVC  660
TNNINLISKQ QNMESVATVH TLLSSSVQKI KAGLDCSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435660.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1S3X6P60.0A0A1S3X6P6_TOBAC; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11