PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00287g17023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 900aa    MW: 97923.6 Da    PI: 6.9067
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00287g17023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27e-19332431198
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+kvl+ sd+++ grlvlpk++ae++   ++++ +  l+++d++g +W++++++  +++s++yvl+ G     ++ +L++gD+v+
  Peinf101Scf00287g17023.1 332 FEKVLSASDAGRIGRLVLPKRCAEAYfpPISNPDGLPLKVQDLKGTEWNFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVT 415
                               99**************************444456667***************9989999999***9.****************** PP

                               EEE-SSSEE..EEEEE- CS
                        B3  82 Fkldgrsefelvvkvfr 98 
                               F++++  +++lv++ ++
  Peinf101Scf00287g17023.1 416 FSRIE-PDGKLVMGCRK 431
                               **987.77767776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-31328440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-20329428IPR015300DNA-binding pseudobarrel domain
CDDcd100177.07E-24330431No hitNo description
PROSITE profilePS5086310.884332433IPR003340B3 DNA binding domain
PfamPF023622.4E-16332431IPR003340B3 DNA binding domain
SMARTSM010198.8E-23332432IPR003340B3 DNA binding domain
PROSITE profilePS5105012.888578634IPR011124Zinc finger, CW-type
PfamPF074961.5E-10590631IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MSSSAKACCF NANCKELVEV PKKGWRRRTG EFADLCDRCA SAYDDGKFCE TFHLNSSGWR  60
SCESCGKQIH CGCIVSFHTF VLLDAGGIEC LSCARKSFIL TPNPAWPPPS LFLPLQPERI  120
KDVNNWNPIA GSGPVPWRQA PSLFNGSTIQ NEMQPRTPFI DATGSVDRLC LSERLSASSS  180
DNNRKDPCEK LMNGKLKIGV PGILENGYAG LNCEEPTKSC LSAPRQLSFV KNDLSTPSFS  240
LTIGSSCKNE PTDHNNVSAS LPQQATLPTP LGKQPSGHAT VDSAGETQVR NSKSRGDGRG  300
KHHLLPRYWP RITDRELQQI SGDSNSVITP LFEKVLSASD AGRIGRLVLP KRCAEAYFPP  360
ISNPDGLPLK VQDLKGTEWN FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDIVTFSRIE  420
PDGKLVMGCR KASTAEQGSE ACSNSNGVVT NGNVNTKSNK LSEEVLANST KKGSSSIPHV  480
AMADSTSARV EIKISDDMVK ESLGNNFSVP CKRKSSTLGS KSKRMRIENE ALLELKVTVV  540
QAQELMRPPS SDAPTVIVVE GCEFEEYEDA PIIGRPTIPS MDYLGEKIQL VQCEDCFKWR  600
KVPDSALLPS RWTCSENSWD PERSVCSAVQ ELTADHLRDL LPHINKAAKK MKASKQETDL  660
VEALDGLDAL ANLAILEEGS LPASSQATTK HPRHRPGCTC IVCIQPPSGG PKHKQSCDCI  720
VCKSVKRRFK TLMLKREQKL SEKEAEAACQ KLQPQLAGQL LDADDIQESM DEAGHVSPQH  780
GELKNEGYVE DLNSLNEKKS SASPLKGEID LNAKPERDDE LSPGSDSGSM MRILQDAAEQ  840
YVRHCGNGNL AGTKKNGNGA GETNPSNCII VGGSQTDVGH NRPFSIGTAA SLAPNDPLDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-643104352127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514250.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBLA0A1S4DLG50.0A0A1S4DLG5_TOBAC; B3 domain-containing protein Os07g0563300-like isoform X2
STRINGXP_009794882.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-152high-level expression of sugar-inducible gene 2