PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00267g07037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 21484.5 Da PI: 4.3452 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 43.5 | 7.6e-14 | 19 | 114 | 8 | 96 |
NF-YB 8 lPianvsrimkkvlP.....anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 lP + v r++k+ l +n+ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++eplk+ Peinf101Scf00267g07037.1 19 LPKTIVRRLVKEKLTqlstdKNTDISllRDSLTAFSESARLFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIEPLKA 103 67777777777766522122455666446888899999*********************************************** PP NF-YB 86 ylkkyrelege 96 l+ +r+ +++ Peinf101Scf00267g07037.1 104 SLEVFRQKNAK 114 ******98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.3E-27 | 7 | 119 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-21 | 18 | 128 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-8 | 19 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.3E-27 | 151 | 165 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGEVEKQKDK EKVVEQEGLP KTIVRRLVKE KLTQLSTDKN TDISLLRDSL TAFSESARLF 60 IHYLSATAND ICKESKRQTI NAEDVFKALE EIEFPEFIEP LKASLEVFRQ KNAKRKSGSS 120 KSTESNKKSK LKEPVENGRG KMKEQPSDNE NEDEQAEEEA VNENEDGQAE EESNGQAEEE 180 SDEQEASADD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 3e-11 | 1 | 108 | 1 | 100 | DNA polymerase epsilon subunit D |
5y27_A | 3e-11 | 1 | 108 | 1 | 100 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217004 | 4e-47 | AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence. | |||
GenBank | HG975523 | 4e-47 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251060.1 | 2e-83 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A3Q7IZT6 | 4e-82 | A0A3Q7IZT6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g068480.1.1 | 6e-83 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 8e-26 | nuclear factor Y, subunit B11 |