PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00264g04030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27476.3 Da PI: 9.337 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.1 | 5.5e-24 | 41 | 91 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rq t+skR+ gi KKA+EL vLCd++va+++fs+tg+l yss Peinf101Scf00264g04030.1 41 KKIENSTSRQQTYSKRKDGIVKKANELAVLCDTDVALLMFSPTGQLTSYSS 91 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-31 | 33 | 92 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.24 | 33 | 93 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-26 | 34 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-21 | 35 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 35 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-22 | 42 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-21 | 55 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-21 | 70 | 91 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTNSASFIRL SCSFLIFPFL TFIHSSSSLH PFMGRNKLVM KKIENSTSRQ QTYSKRKDGI 60 VKKANELAVL CDTDVALLMF SPTGQLTSYS SRGSVEDIML RVVNQPGELN RRFIPDEQHM 120 SQRLTQLKYE GEMAHEEKLN KLARRLREAR EKLRYYEPRM KEINSVQEAV ACQQFLMSAL 180 ERIQQSKAKL LGSEEFIQRN ENVEVASVNA EDSADASNRV AYSNLRDESY EKQTGPRLH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439162.1 | 1e-107 | PREDICTED: agamous-like MADS-box protein AGL66 isoform X1 | ||||
TrEMBL | A0A1S3XHI9 | 1e-106 | A0A1S3XHI9_TOBAC; agamous-like MADS-box protein AGL66 isoform X1 | ||||
STRING | XP_009776411.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 6e-25 | AGAMOUS-like 67 |