PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00258g01007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 92aa MW: 10786.7 Da PI: 10.1846 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.7 | 1.8e-19 | 8 | 58 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ ++rqvtfskRr+ + KKAeE+ v Cd++v+ + fs++g++ +++ Peinf101Scf00258g01007.1 8 KKIEEITKRQVTFSKRRTSLTKKAEEIAVCCDVDVLFVAFSPSGRINKFCT 58 689********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.698 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-20 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-23 | 3 | 84 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-19 | 9 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGRKIEMKKI EEITKRQVTF SKRRTSLTKK AEEIAVCCDV DVLFVAFSPS GRINKFCTKK 60 SIEDFLLRYM NLPVERRLTH IADVQVLHYS IH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009630259.1 | 4e-49 | PREDICTED: agamous-like MADS-box protein AGL104 | ||||
Refseq | XP_016446375.1 | 8e-47 | PREDICTED: agamous-like MADS-box protein AGL8 homolog | ||||
Swissprot | Q9LM46 | 1e-20 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A314LD59 | 7e-47 | A0A314LD59_NICAT; Uncharacterized protein | ||||
STRING | XP_009630259.1 | 1e-48 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3785 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 8e-19 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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