PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00255g11004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 191aa MW: 21938.8 Da PI: 8.0139 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 74.8 | 1.2e-23 | 13 | 66 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 v+Y eC++N Aas g+a+DGCgEf+p+ g++gt++ + CaAC CHRnFHR+ + Peinf101Scf00255g11004.1 13 VVKYWECMHNYAASSMGYALDGCGEFCPT-GSHGTPEYFICAACHCHRNFHRKME 66 689*************************8.999*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.6E-21 | 14 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-12 | 14 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.1E-20 | 15 | 64 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.408 | 16 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.11E-7 | 123 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-13 | 129 | 184 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MANSHNKHLH GTVVKYWECM HNYAASSMGY ALDGCGEFCP TGSHGTPEYF ICAACHCHRN 60 FHRKMEIVDV EVALEIPSNH GKSWGLPSQT YDKNTVVATP SPLPMEAEIG GGEIDQVDRS 120 YKRNNCSYPR IRLNPEQREK VKAFAEKVGW RWSKYNEEVK PFCEEIGITP NFLKNWIDNN 180 RRRFGPNKII Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799887.1 | 2e-62 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_016452911.1 | 2e-62 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A314L8S2 | 4e-65 | A0A314L8S2_NICAT; Zinc-finger homeodomain protein 6 | ||||
STRING | XP_009799887.1 | 9e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10889 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-29 | homeobox protein 24 |