PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00249g13022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 462aa MW: 49903.2 Da PI: 7.2873

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00249g13022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Peinf101Scf00249g13022.1 27 FVCEICNKGFQRDQNLQLHRRGH 49 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	26	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.56E-6	26	49	No hit	No description
PROSITE profile	PS50157	10.949	27	49	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.2E-5	27	49	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2
SMART	SM00355	180	68	98	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	91	124	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.56E-6	98	124	No hit	No description
SMART	SM00355	120	103	123	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MFFFLFVDPE AEVMALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS 60 NEVKKRVYVC PEINCVHHDP SRALGDLTGI KKHFCRKHGE KKFKCERCTK KYAVLSDCKA 120 HMKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR SHEPMGITNN TEEDLKIDEA 180 VVTKEMSSCS SPPPQPLTPS TGVLSPVLSI QSSEMHADNQ IQAGVQLQQA QGTTPATVTA 240 TTISTTPASG PCSSKVFASV FPSSTSTSTG QAHSSYSDIL CCAIGTEQQP TAIEPMSLSL 300 SSSLYLSNNQ PALFQEQHQH YGSMTQPALS ATALLQKAAQ MGATSSNNSF LRGLGLAMSS 360 TPTSDIISNV KLENNVEVPG LGTQIPSNGS SGFTDLMMGP SQSMMFGNKP ATLDFLGLGD 420 GANGNSSNGF SAFLNSMEGG FGVVATTGEP WDDHSDRKPS TL

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MFFFLFVDPE AEVMALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  60
NEVKKRVYVC PEINCVHHDP SRALGDLTGI KKHFCRKHGE KKFKCERCTK KYAVLSDCKA  120
HMKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR SHEPMGITNN TEEDLKIDEA  180
VVTKEMSSCS SPPPQPLTPS TGVLSPVLSI QSSEMHADNQ IQAGVQLQQA QGTTPATVTA  240
TTISTTPASG PCSSKVFASV FPSSTSTSTG QAHSSYSDIL CCAIGTEQQP TAIEPMSLSL  300
SSSLYLSNNQ PALFQEQHQH YGSMTQPALS ATALLQKAAQ MGATSSNNSF LRGLGLAMSS  360
TPTSDIISNV KLENNVEVPG LGTQIPSNGS SGFTDLMMGP SQSMMFGNKP ATLDFLGLGD  420
GANGNSSNGF SAFLNSMEGG FGVVATTGEP WDDHSDRKPS TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-31	99	160	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-31	99	160	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244603.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X1
Refseq	XP_019244607.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Swissprot	Q9SCQ6	1e-127	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1J6JLN6	0.0	A0A1J6JLN6_NICAT; Zinc finger protein magpie
STRING	XP_009805007.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-103	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]