PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00244g17003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 723aa    MW: 81637.6 Da    PI: 7.3232
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00244g17003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.43.9e-1193507201374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL+ cA+av++++ + a++lL+++++++sp gd mqRl++yf+++L+ar+a+s++++yka+ +++ s    +++l++++l++
  Peinf101Scf00244g17003.1 350 LRTLLTLCAQAVAADNRRTANELLQQIRQNSSPMGDGMQRLTHYFANGLEARMAGSGTHIYKAVITRPIS---AADVLKSYQLLH 431
                               5789***************************************************************999...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                v P+ k s++  N++I + +e++++vHiiDf+i++G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++
  Peinf101Scf00244g17003.1 432 AVAPLWKNSNFFSNKTITNLAEKASTVHIIDFGIMYGFQWPSLIQRLSSRPGGPPKLRITGIDFPHPGfrPAERVEETGRRLANY 516
                               ******************************************************************9999*************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               Ae+++vpfefn+ +a+++e+++le+L+++++E+l+Vn+ ++l +llde+v ++s+rd vL+l+++l+P+v++    +  +n++ F
  Peinf101Scf00244g17003.1 517 AESFKVPFEFNA-IAQKWETVKLEDLKIHKNEVLVVNCLFRLRSLLDETVVSNSPRDVVLNLIRKLNPDVFIQGIVNGGYNAPFF 600
                               ************.7*********************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf eal +ys+lfd+lea +pre +er+ vE+ +lg+e++nv+ace aer+er et+++W+ r+++aGF+++pl+++++  a 
  Peinf101Scf00244g17003.1 601 VTRFREALFHYSSLFDMLEAIIPREMHERMLVEKTMLGPEAMNVIACEDAERIERPETYKQWQIRMMKAGFRQLPLDKEIMRMAT 685
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++ ++++ + ++ + ++l++gWk+r  +++S W+
  Peinf101Scf00244g17003.1 686 EHVKLYNKN-FVIDVDGHWLLQGWKGRISYALSTWK 720
                               *******66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.425324701IPR005202Transcription factor GRAS
PfamPF035141.4E-116350720IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MRLYEAGSTI KLEDKEDSSF FPDPNLINNL RVSDNLVNKN HIARCDVKPN TTSVPSSSAD  60
DSHYDFSDVV LKYINQMLME EDIEDKACMC QESAALQAAE RSFYEVIGEK YPLLANHEKL  120
SDLGQNGHYA SDYNSFYDTG NDGRDGILCP NWNLDHSEND VSHMKHFPNG VALCSTSRSS  180
HSSSDIVTDV RVNSPVSTLR IPEIFSDSES TMQFKKGVEE ASKFLPTGNS LLVEVRYNVV  240
GKEQNEERKD AVVKVTPVGS RGKKNTHHED VDSAEGRNIK QLAVFSESTI RSEMFDRVLL  300
CSKGKNESAL REALQIVSRQ NASENGLSKG SNGKKLQGKN KEGKRDVVDL RTLLTLCAQA  360
VAADNRRTAN ELLQQIRQNS SPMGDGMQRL THYFANGLEA RMAGSGTHIY KAVITRPISA  420
ADVLKSYQLL HAVAPLWKNS NFFSNKTITN LAEKASTVHI IDFGIMYGFQ WPSLIQRLSS  480
RPGGPPKLRI TGIDFPHPGF RPAERVEETG RRLANYAESF KVPFEFNAIA QKWETVKLED  540
LKIHKNEVLV VNCLFRLRSL LDETVVSNSP RDVVLNLIRK LNPDVFIQGI VNGGYNAPFF  600
VTRFREALFH YSSLFDMLEA IIPREMHERM LVEKTMLGPE AMNVIACEDA ERIERPETYK  660
QWQIRMMKAG FRQLPLDKEI MRMATEHVKL YNKNFVIDVD GHWLLQGWKG RISYALSTWK  720
AAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5635771926378Protein SCARECROW
5b3h_A1e-5635771925377Protein SCARECROW
5b3h_D1e-5635771925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607974.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_009607976.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_009607977.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_018628267.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S4AZ920.0A0A1S4AZ92_TOBAC; scarecrow-like protein 14
STRINGXP_009607974.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]