PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00244g06031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 25887.4 Da PI: 9.0187 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.8e-08 | 24 | 63 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 WT+eE +++ a + + + +W++I+++++ g++ ++ Peinf101Scf00244g06031.1 24 EWTKEENKRFESALAIYDEKtpnRWSKISAMIP-GKSVLDV 63 7********************************.*998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.946 | 17 | 71 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-5 | 17 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-11 | 23 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-8 | 24 | 71 | No hit | No description |
Pfam | PF00249 | 5.9E-7 | 24 | 67 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.831 | 102 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7 | 106 | 150 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.09E-9 | 109 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-4 | 110 | 147 | No hit | No description |
TIGRFAMs | TIGR01557 | 1.4E-11 | 110 | 151 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.7E-6 | 110 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-5 | 111 | 147 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
METLFPTTFL PNSSWMMQES KSTEWTKEEN KRFESALAIY DEKTPNRWSK ISAMIPGKSV 60 LDVMMQYKEL VADVSDIEAG LDPIPRHFAS SFTLDFVDDR QINSLRKRSR RFLMGLEKYG 120 KGDWRNISKN FVISKTPTQV ASHAQKYYLR QLSGGKDKKR PSIHDITTVD LTDNALLSNN 180 KSMREEKSCT ASHLQISTST ADVLIGCWNN SNDGGLMAFH SLYGSSIL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019241356.1 | 1e-124 | PREDICTED: transcription factor DIVARICATA-like isoform X1 | ||||
Refseq | XP_019241357.1 | 1e-125 | PREDICTED: transcription factor DIVARICATA-like isoform X2 | ||||
Swissprot | Q8S9H7 | 4e-68 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1J6JSM6 | 1e-123 | A0A1J6JSM6_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009776702.1 | 1e-123 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-73 | MYB family protein |
Publications ? help Back to Top | |||
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