PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00236g08024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 119aa MW: 13317.7 Da PI: 10.5143 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.3 | 3.9e-17 | 17 | 51 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+tt TplWR+gp g+k+LCnaCG++y kk++ Peinf101Scf00236g08024.1 17 CIYCHTTRTPLWRSGPGGPKSLCNACGIKYNKKRR 51 667*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.71E-13 | 10 | 51 | No hit | No description |
PROSITE profile | PS50114 | 11.846 | 11 | 46 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.9E-12 | 11 | 69 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.4E-14 | 16 | 51 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.62E-12 | 16 | 61 | No hit | No description |
Pfam | PF00320 | 5.6E-15 | 17 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MDLNEVKRSE VEEMKACIYC HTTRTPLWRS GPGGPKSLCN ACGIKYNKKR RQLLGLDKGR 60 SEKAKKKKIR KINGEMKNSS SREIGQSLKM KLMALGGKLR EEEQAAILLM ALSCGSIYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 67 | KRRQLLGLDKGRSEKAKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758127.1 | 1e-61 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 1e-25 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A1U7UPT2 | 2e-60 | A0A1U7UPT2_NICSY; GATA transcription factor 16-like | ||||
STRING | XP_009758127.1 | 4e-61 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 9e-21 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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