PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00236g05001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 315aa MW: 35408.2 Da PI: 4.5491 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 8e-08 | 14 | 49 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...k 33 rgrWT+eEde l +++ G g+W++ ++ k Peinf101Scf00236g05001.1 14 RGRWTAEEDETLTNYILTNGEGSWRSLPKNADlarK 49 8*************************9998875543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 5 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.24E-7 | 8 | 49 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.922 | 9 | 48 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDETLTNYIL TNGEGSWRSL PKNADLARKG ALKQIKRRVG 60 RTSRSTMMRN RKSKNSAVSS LSMPKQLKES SEPLNATVPI MPSTPNSEKE ALSSTISSWL 120 DGNNAMDSMQ KEVANIAAPN PLMESREAHS SLSSDGMEWL EEIMPLVIDD QDMDPNFIFT 180 CLENRQGESA VKVTEEADNN FLNTSKINER DHNNRESSEA AVSINIHDKQ VHEKSNETSS 240 LMEDEGTFDQ WDWKEITHDG GNVWPWDDNN SLQLWDSTTD DTGFLQNCIN EATVEMESVH 300 CENQKHSALV AWLLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 57 | LKQIKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246268.1 | 1e-91 | PREDICTED: transcription factor MYB12-like | ||||
TrEMBL | A0A1J6JAW1 | 3e-90 | A0A1J6JAW1_NICAT; Transcription factor myb12 | ||||
STRING | XP_009622107.1 | 2e-88 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 3e-23 | myb domain protein 111 |