PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00234g08010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 281aa    MW: 31011.1 Da    PI: 4.4726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00234g08010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
  Peinf101Scf00234g08010.1 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                              79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.049966IPR017930Myb domain
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002491.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241580IPR009057Homeodomain-like
SuperFamilySSF466891.17E-171584IPR009057Homeodomain-like
CDDcd001676.27E-91662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC TLYASIVSSS PYSSTTTIPC YESTIPSLAS SSFLNTASAS  120
CTSVISGSTS GTVLQVQESY VGGPTTSSDG SYTNQMSQGR DQLEYDYGVS NGGENLDFHN  180
YLYNNGIIGL EDQSTSSKFL NIEAADEKPI INANSCYVQQ EQNPLDYSLE EIKQLISTNN  240
VTCNSNFFVD ENKIEEKVMI FTSQFSSSDD TSYSNHSFFN N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2285911e-117JQ228591.1 Nicotiana tabacum ntrax mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354368.17e-74PREDICTED: transcription factor RAX2
TrEMBLA0A1S4BYE95e-76A0A1S4BYE9_TOBAC; transcription factor RAX2-like
STRINGPGSC0003DMT4000099263e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.18e-53myb domain protein 68