PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00231g13016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 28451.9 Da PI: 5.4229 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 8e-18 | 34 | 85 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Peinf101Scf00231g13016.1 34 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 85 57899**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-19 | 22 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 30 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.23E-15 | 31 | 88 | No hit | No description |
Pfam | PF00046 | 3.6E-15 | 34 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 35 | 94 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.9E-6 | 58 | 67 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.9E-6 | 67 | 83 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.1E-16 | 87 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MTFSGVEDNN LAENHGEDDL SDEGSHEAGE KKIRRLNMEQ VKTLEKNFEL GNKLEPERKM 60 QLARALGLQP RQIAIWFQNR RARWKTKQLE KDYEVLKTEF EAIKADNDAL QAQNQKLHAE 120 IMTLKNREHP TEYYSINLNK ETEGSCSNRS ENSSEIKLDI SRTPPIDSPL ISIHQPTSSI 180 PFFPPPTRPT GVAQLFQHAS SRQELIQCNM KIMDQTVKEE NLSNMLCGMD DQSAAAFWPW 240 LEQPHYN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021664920.1 | 1e-121 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 3e-89 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | M1CEL2 | 1e-120 | M1CEL2_SOLTU; Uncharacterized protein | ||||
STRING | cassava4.1_013285m | 1e-120 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-87 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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