PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00231g06015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 385aa    MW: 43795.1 Da    PI: 8.0708
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00231g06015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.6e-53171441128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               + pGfrFhPtdeelv +yL++k+++k l++ e ik++diyk++PwdLpk ++ +e+ewyfF++rd+ky++++r+nr+t +g+Wka
  Peinf101Scf00231g06015.1  17 MLPGFRFHPTDEELVGFYLRRKIQHKALSI-ELIKQLDIYKYDPWDLPKLATVGEREWYFFCPRDRKYRNSTRPNRVTGAGFWKA 100
                               579***************************.89***************8778899****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Peinf101Scf00231g06015.1 101 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRL 144
                               *********956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5813175IPR003441NAC domain
PROSITE profilePS5100557.6417175IPR003441NAC domain
PfamPF023651.5E-2619144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEERNHETDS SKIDEVMLPG FRFHPTDEEL VGFYLRRKIQ HKALSIELIK QLDIYKYDPW  60
DLPKLATVGE REWYFFCPRD RKYRNSTRPN RVTGAGFWKA TGTDRPIYSS EGSKCIGLKK  120
SLVFYKGRAA KGTKTDWMMH EFRLPSITDS STPKRFLDKN IPPNDSWAIC RIFKKANSNA  180
HRALSHSWMS PQMPSNTTPD LLTSNHLTSN EMSFLTKASS AIQCSHDFQN SSVASFSPLD  240
LPPYRTINPM TSHRLPQQIS ISNHDSTTSY YTFSNSCTNL NNTDASSLLL NMSSSILGNF  300
SKASEGTMDY NFSITLPENV EENNRQEAGT LLKEQNVNVD HIGFPVNGFP LNMTADAWKS  360
NFLWESSPCP SDQMSTSYST NKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-561917822171NAC domain-containing protein 19
3swm_B3e-561917822171NAC domain-containing protein 19
3swm_C3e-561917822171NAC domain-containing protein 19
3swm_D3e-561917822171NAC domain-containing protein 19
3swp_A3e-561917822171NAC domain-containing protein 19
3swp_B3e-561917822171NAC domain-containing protein 19
3swp_C3e-561917822171NAC domain-containing protein 19
3swp_D3e-561917822171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590031.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-108FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3ZXF50.0A0A1S3ZXF5_TOBAC; protein FEZ-like
STRINGXP_009590031.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-108NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]