PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00231g01029.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 461aa    MW: 50554.9 Da    PI: 6.8887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00231g01029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.99.9e-34170226259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpv+kkvers  d++v+ei+Y+g+Hnh+
  Peinf101Scf00231g01029.1 170 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVTKKVERSL-DGQVTEIIYKGQHNHQ 226
                               8****************************************.***************8 PP
2WRKY106.61.2e-33336394159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Peinf101Scf00231g01029.1 336 LDDGYKWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 394
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-30163228IPR003657WRKY domain
PROSITE profilePS5081123.571164228IPR003657WRKY domain
SuperFamilySSF1182901.44E-26167228IPR003657WRKY domain
SMARTSM007743.3E-38169227IPR003657WRKY domain
PfamPF031065.0E-26170226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37322396IPR003657WRKY domain
SuperFamilySSF1182906.15E-30328396IPR003657WRKY domain
PROSITE profilePS5081138.962331396IPR003657WRKY domain
SMARTSM007748.2E-40336395IPR003657WRKY domain
PfamPF031063.5E-26337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAENQPSSTS APMRPTITLP PRASMESLFM GGPGGVSPGP MTLVSNFFSN PDSEYPSFSQ  60
LLAGAMASPA DGFWTVKGPF GMSHQQALAQ VTAQAAQPQS LLHIQPDYPP TSAAPAPSDS  120
QFQSLTSNAT TNQHMPAPTS DPNVMKEASE VSLSDQRSEP ASIAVDKPAD DGYNWRKYGQ  180
KQVKGSEYPR SYYKCTHPNC PVTKKVERSL DGQVTEIIYK GQHNHQPPQH SKRSKESGNP  240
NGIYNLQGPS GLSQAYVPSY SLTMKDQESS QATHDQISEL NEGEEVGDAE NIADGNDERE  300
SKRRAIEVQT SDAASSHRTV AEPRIIVQTT SEVDLLDDGY KWRKYGQKVV KGNPYPRSYY  360
KCTSQGCNVR KHVERAASDP KAVITTYEGK HNHDVPAARN SSHNTTNNSV PQLRPHNPVV  420
AKQDATRRTV LRNNEQQPIA LLRFKEEQLP SLLEQDLSLA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-42170397878Probable WRKY transcription factor 4
2lex_A6e-42170397878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0962990.0AF096299.1 Nicotiana tabacum DNA-binding protein 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794188.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-129WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1U7XTB80.0A0A1U7XTB8_NICSY; probable WRKY transcription factor 4
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-126WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]