PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00224g11014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24118.7 Da    PI: 5.2094
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00224g11014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.72.6e-0720462248
                              HHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF 22 KKAeELSvLCdaevaviifsstgklye 48
                              K A+ELS+L++a++ v++fs++gk y+
  Peinf101Scf00224g11014.1 20 KEAQELSTLTGADIGVMLFSPSGKSYT 46
                              78**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-6750IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-10865IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.7882051IPR002100Transcription factor, MADS-box
PfamPF003191.7E-72046IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MERERSKGRQ KIEMKLIKSK EAQELSTLTG ADIGVMLFSP SGKSYTCIST NIAEIIGKFL  60
QLKQDEFDDS YNVDKLLDVF KAFDDLRDEI IIHLGSEIPP EKNRLVRLVE CKLQLDNLKK  120
MTIRIQELMP STSRSVPSTS AKPRLNFDLN ILSGLDEEEC SGTKSIEFKK KYSLVVRFSI  180
SEFESETSNY EYTNLIHTTI SLSGLGALFE FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-08M-type_MADS family protein