PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00208g03002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 160aa MW: 17965 Da PI: 9.979 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.6e-20 | 28 | 79 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ r +r +lg+f+taeeAa+a+++a+ +l+g+ Peinf101Scf00208g03002.1 28 KYRGVRRRP-WGKFAAEIRDPT----RpgARQWLGTFDTAEEAARAYDRAAFNLRGH 79 8********.**********96....355**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-36 | 28 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-23 | 28 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-31 | 28 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.329 | 28 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.67E-30 | 28 | 87 | No hit | No description |
Pfam | PF00847 | 5.4E-14 | 28 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEGNSFRGKK AMQDKEGGNT KKGNEEVKYR GVRRRPWGKF AAEIRDPTRP GARQWLGTFD 60 TAEEAARAYD RAAFNLRGHL ATLNFPNEYY NQLTHPPLYY RHSFSSPTNI FGSSNISSGS 120 LERGSSSSTG KAREIIELEC LDNSVLEELL GAADTKMKRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-29 | 23 | 89 | 9 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233066.1 | 1e-91 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 2e-42 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A1J6KS49 | 3e-90 | A0A1J6KS49_NICAT; Ethylene-responsive transcription factor erf098 | ||||
STRING | XP_009780511.1 | 9e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 9e-33 | ERF family protein |
Publications ? help Back to Top | |||
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