PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00208g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 143aa MW: 16057.9 Da PI: 4.3894 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.7 | 7.3e-09 | 35 | 56 | 8 | 29 |
HHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 8 nrqvtfskRrngilKKAeELSv 29 +r+vtfskR g++KKA+ L + Peinf101Scf00208g00013.1 35 RRHVTFSKRHLGLFKKASKLRI 56 9****************98866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.11E-6 | 34 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-7 | 35 | 56 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.152 | 35 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MDYCLGGLSS TFDITCSAVF YIPAGGDDVD GGGARRHVTF SKRHLGLFKK ASKLRINAEI 60 SISNNQYYSK ICGELEAEKQ TKEIIEESNI VNDNNDGVFW WDEESNDDVG VEELEEFVTA 120 LEEFKKCKAI KLVSSFGFPW KEP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602824.1 | 1e-23 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7ERW3 | 1e-19 | A0A3Q7ERW3_SOLLC; Uncharacterized protein | ||||
STRING | XP_009602824.1 | 4e-23 | (Nicotiana tomentosiformis) |