PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00204g10013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 722aa MW: 79820.9 Da PI: 6.2556

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00204g10013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	60	115	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F++n++p+ ++r+eL k+lgL+ q+k+WFqN+R+++k Peinf101Scf00204g10013.1 60 KKRYHRHTQHQIQEMETFFKENPHPDDKQRKELGKRLGLEPLQIKFWFQNKRTQMK 115 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.18E-19	44	117	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-21	45	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	57	117	IPR001356	Homeobox domain
SMART	SM00389	4.4E-18	58	121	IPR001356	Homeobox domain
CDD	cd00086	4.77E-18	60	118	No hit	No description
Pfam	PF00046	4.8E-17	60	115	IPR001356	Homeobox domain
SuperFamily	SSF55961	6.87E-28	239	476	No hit	No description
PROSITE profile	PS50848	37.688	239	477	IPR002913	START domain
CDD	cd08875	1.78E-108	243	473	No hit	No description
SMART	SM00234	5.0E-56	248	474	IPR002913	START domain
Pfam	PF01852	1.4E-45	249	474	IPR002913	START domain
SuperFamily	SSF55961	3.43E-26	494	718	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MFKPNMFESH HHLLDMSTNK MPENEMDFIR DEEFESKSGT EIMEAPNSGD DQDPNTRPKK 60 KRYHRHTQHQ IQEMETFFKE NPHPDDKQRK ELGKRLGLEP LQIKFWFQNK RTQMKAQHER 120 HENTQLRNEN EKLRNENIRY KEALSNAACP NCGGPAAIGE MSFDEQHLRI ENARLREEID 180 RISGIAAKYV GGKPILSYPA LPPPEAPRSL DLGFGPQSGL LGEMYNASDL LRTAVSGLTD 240 AEKPMVIELA VAAMEELVRM AQTSEPLWLS SPKGNIEILS EEEYVRAFPR GIGPKPISLR 300 TEASRESAVV IMNHINLVEI LMDVNQWTNV FAGLVSKAMT LEVLSTGVAG NYNGALQVMT 360 AEFQVPSPLV PTRENYFVRY CKQHADGTWA VVDVSLDNLR PTSVSRCRRR PSGCLIQELP 420 NGYSKVSPTS ENLIGLEFQH WLSDISSWLK VIYILSLAFG AKRWVATLDR QCERLASAMA 480 NNIPTGDVGI ITSPAGRKSM LKLAERMVLS FCAGVGASTT HTWTTLSGSG ADDVRVMTRK 540 SVDDPGRPPG IVLSAATSFW LPVSPKRVFN FLRDENSRSE WDILSNGGLV QEMAHIANGR 600 DPGNCVSLLR VNSGNSSQSN MLILQESSTD STGSYVIYAP VDIVAMNVVL NGGDPDYVAL 660 LPSGFAILPD ANPEVGTPCT LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKTA 720 VT

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MFKPNMFESH HHLLDMSTNK MPENEMDFIR DEEFESKSGT EIMEAPNSGD DQDPNTRPKK  60
KRYHRHTQHQ IQEMETFFKE NPHPDDKQRK ELGKRLGLEP LQIKFWFQNK RTQMKAQHER  120
HENTQLRNEN EKLRNENIRY KEALSNAACP NCGGPAAIGE MSFDEQHLRI ENARLREEID  180
RISGIAAKYV GGKPILSYPA LPPPEAPRSL DLGFGPQSGL LGEMYNASDL LRTAVSGLTD  240
AEKPMVIELA VAAMEELVRM AQTSEPLWLS SPKGNIEILS EEEYVRAFPR GIGPKPISLR  300
TEASRESAVV IMNHINLVEI LMDVNQWTNV FAGLVSKAMT LEVLSTGVAG NYNGALQVMT  360
AEFQVPSPLV PTRENYFVRY CKQHADGTWA VVDVSLDNLR PTSVSRCRRR PSGCLIQELP  420
NGYSKVSPTS ENLIGLEFQH WLSDISSWLK VIYILSLAFG AKRWVATLDR QCERLASAMA  480
NNIPTGDVGI ITSPAGRKSM LKLAERMVLS FCAGVGASTT HTWTTLSGSG ADDVRVMTRK  540
SVDDPGRPPG IVLSAATSFW LPVSPKRVFN FLRDENSRSE WDILSNGGLV QEMAHIANGR  600
DPGNCVSLLR VNSGNSSQSN MLILQESSTD STGSYVIYAP VDIVAMNVVL NGGDPDYVAL  660
LPSGFAILPD ANPEVGTPCT LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKTA  720
VT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269\|PubMed:11439135, ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019223778.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Swissprot	Q8RWU4	0.0	ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBL	A0A1J6IN90	0.0	A0A1J6IN90_NICAT; Homeobox-leucine zipper protein meristem l1
STRING	XP_009605863.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Takada S,Takada N,Yoshida A Induction of epidermal cell fate in Arabidopsis shoots. Plant Signal Behav, 2013. 8(11): p. e26236 [PMID:23989220] Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development. Plant Cell Physiol., 2015. 56(9): p. 1855-66 [PMID:26220906] Katagiri Y, et al. The coordination of ploidy and cell size differs between cell layers in leaves. Development, 2016. 143(7): p. 1120-5 [PMID:26903507] Seeliger I, et al. The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] Schwarz EM,Roeder AH Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals. Front Plant Sci, 2016. 7: p. 1744 [PMID:27920789] Meyer HM, et al. Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal. Elife, 2018. [PMID:28145865]