PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00200g20013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 244aa    MW: 27442.2 Da    PI: 4.1435
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00200g20013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-111449137
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                              +g+WT+eEd++l+d+++++G g+W+  ++  g g +l
  Peinf101Scf00200g20013.1 14 KGPWTQEEDQKLIDYIQKHGYGNWRVLPKSAG-GQSL 49
                              79***************************999.8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-13543IPR009057Homeodomain-like
SuperFamilySSF466891.59E-9843IPR009057Homeodomain-like
PROSITE profilePS5129412.494954IPR017930Myb domain
PfamPF002492.5E-91448IPR001005SANT/Myb domain
CDDcd001671.96E-71648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRTPCCEKN GLKKGPWTQE EDQKLIDYIQ KHGYGNWRVL PKSAGGQSLV NPEVLRILAN  60
SLLSPQYTVK PSELVDQNLL MSRNLQGNQL SNPQVQNKLP PLVQDISCGP CSNEAQLMQQ  120
ANVEQFSSNM SNYSSQNCQL NDWQNQEMPS DLTEDYNYPL HNYGYYQQDQ SIMDPPPSDA  180
SAFQSNDSNV SYQSILSTPS SSPTPLNSNS SYINSTTTED ERESYCSNMF NFDIQNMLDV  240
NALL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448702e-31AC244870.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30c5 map 10, complete sequence.
GenBankAC2547682e-31AC254768.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-39i21 map 10, complete sequence.
GenBankHG9754492e-31HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755222e-31HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801248.19e-62PREDICTED: protein ODORANT1-like
RefseqXP_016465732.19e-62PREDICTED: protein ODORANT1-like
TrEMBLA0A2N9IE606e-70A0A2N9IE60_FAGSY; Uncharacterized protein
STRINGXP_009801248.13e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-25MYB-like 102