PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00191g31018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 700aa    MW: 78843.6 Da    PI: 5.8512
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00191g31018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.1e-12581646262
                               EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE- CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvlt 62 
                               +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+
  Peinf101Scf00191g31018.1 581 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE 646
                               79*************************999999********7778*******99888888889987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-17574648IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-12579647IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0017580673IPR003340B3 DNA binding domain
PfamPF023624.3E-8581646IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEFHGNQDGL ENVMVDMDDI HQSQHQHQEQ QPAEFETMDE EQVNIGAIVG DTEIFLNGDE  60
HEQHHLGVVN DTSIFSTDFP PLPDFPCMSS SSSTSSAPTA LAKPFPSSSS SSSASSAASW  120
AVLKSDAEED NHFNNKMKME QPTPPPPPPA CLSSSIGDED CLNVMEDLGY MDLIDANEFW  180
DPCSLFQSDQ QNHQDYSNMP ESLIQLSQDD SVLHENQERK PREFDEGGET DMQSLFTGNS  240
ELAFIFFEWL KQNKDYISAE DMRSIKLKRS TIESASKRLG STKEGKKQLL RLILEWVEQY  300
QLQKKQRMSS DSPLQYQESL HDSNHNPNSS FQYNTVAPDP SACFYPSQWM QPTPSPYIPE  360
PLFATPTPGY VGDPYSCNGA AFTPSLNQTL NGSNGYPAPS AEYQTMESAQ SWPPSQFSAN  420
MVAASQYNPF PESDSTNANP QGLFSQYPYQ LFDGNGERLM KLGSSATKEA RKKRMARQRR  480
FSSHHYRHHS HQTQHQSQSS DQNLRMVGEN CAMSPVNNPG NWVYWPSAAH SPMMMVPPPD  540
APQQHPTTER PVMQQQNHQK HASADKRQGW KTEKNLKFLL QKVLKQSDVG NLGRIVLPKK  600
EAESHLPELE SRDGISIAME DIGTSRVWNM KYRFWPNNKS RMYLLENTDT KCGKYLIRGV  660
KVRQNGPKAE GKKPVKKNAR NLTSAAVNSS PVSLMKQLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-24576648173B3 domain-containing transcription factor FUS3
6j9b_D2e-24576648173B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3092184e-47AJ309218.2 Solanum tuberosum gene for VP1-ABI3-like protein, exons 1-6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433829.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLA0A1S3X1N10.0A0A1S3X1N1_TOBAC; B3 domain-containing transcription factor ABI3-like
STRINGXP_009792996.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-121B3 family protein