PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf00174g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 24806.7 Da PI: 7.4216 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 133 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F++ L H +H Peinf101Scf00174g02004.1 133 YICETCNKAFRSYQALGGHRASH 155 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 182 | 203 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C ++Fs+ L H r+H Peinf101Scf00174g02004.1 182 ECPVCYRVFSSGQALGGHKRSH 203 5******************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.4E-4 | 126 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.14E-8 | 133 | 203 | No hit | No description |
Pfam | PF13912 | 2.2E-11 | 133 | 157 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.062 | 133 | 155 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.305 | 133 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 135 | 155 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.8E-12 | 181 | 203 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3 | 181 | 203 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.85 | 181 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 183 | 203 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MDLLQDRESE TESLPYPTQC KRSKRIINSR ISDTHYNQFL SLERRRRQQQ QLYGKITEFP 60 FVESEPVSSI SDTSPDEDVA NCLMMLSRDE WMTQENEVIN DSASYDDDVK TEEKTEDSVV 120 VKVTKTRRGR GKYICETCNK AFRSYQALGG HRASHKKIKV SINETTNNGN VESEVQKDKI 180 RECPVCYRVF SSGQALGGHK RSHGIGVAAT NLINIIY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB006597 | 0.0 | AB006597.1 Petunia x hybrida mRNA for ZPT2-10, complete cds. | |||
GenBank | AB035132 | 0.0 | AB035132.1 Petunia x hybrida gene for C2H2 zinc-finger protein ZPT2-10, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545381.1 | 2e-59 | PREDICTED: zinc finger protein ZAT9-like | ||||
Swissprot | Q9M202 | 1e-37 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | O22082 | 1e-136 | O22082_PETHY; C2H2 zinc-finger protein ZPT2-10 | ||||
STRING | Solyc01g090840.2.1 | 2e-58 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-37 | C2H2-like zinc finger protein |