PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00170g04013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 399aa    MW: 46001.9 Da    PI: 8.7368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00170g04013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.84.8e-076283223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              +C+ Cg sF+ + +Lk+H+++H
  Peinf101Scf00170g04013.1 62 TCEECGVSFKKPAHLKQHMQSH 83
                              6*******************99 PP
2zf-C2H217.71e-0589113123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC  s++rk++L+rH+  H
  Peinf101Scf00170g04013.1  89 FVCHvdDCQSSYRRKDHLTRHLLQH 113
                               89*******************9887 PP
3zf-C2H213.20.00026118143123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               +kCp   C+ +Fs + n+ +H ++ H
  Peinf101Scf00170g04013.1 118 FKCPvdGCKSTFSFQGNMSQHVKKiH 143
                               89*********************999 PP
4zf-C2H221.46.6e-07157181123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+Cp   Cgk+F+  s L++H  +H
  Peinf101Scf00170g04013.1 157 YVCPeaGCGKVFKYASKLRKHEDSH 181
                               9********************9888 PP
5zf-C2H220.81e-06277301223
                               EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                               kC+  dC  +Fs++snL++Hi++ H
  Peinf101Scf00170g04013.1 277 KCEfkDCQHTFSTRSNLVQHIKVaH 301
                               69999*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355331436IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.36E-1059113No hitNo description
SMARTSM003550.00336183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5476188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-96289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PROSITE profilePS501579.41189118IPR007087Zinc finger, C2H2
SMARTSM003550.03589113IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-1090115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-599143No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.058118143IPR007087Zinc finger, C2H2
SMARTSM003550.0051118143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-9154183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.45E-5155181No hitNo description
PROSITE profilePS5015710.97157186IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4157181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159181IPR007087Zinc finger, C2H2
SMARTSM003559.3218243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220243IPR007087Zinc finger, C2H2
SMARTSM0035513246267IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-6257299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.69E-9258314No hitNo description
PROSITE profilePS5015713.131276306IPR007087Zinc finger, C2H2
SMARTSM003550.0043276301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278301IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-5301329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035511307333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280309333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGEEEVKKRD IRRYYCEYCG LCRSKKSLIS SHILSHHQDE IERRKDEGNE DANVKECPKM  60
NTCEECGVSF KKPAHLKQHM QSHSIERPFV CHVDDCQSSY RRKDHLTRHL LQHQGKLFKC  120
PVDGCKSTFS FQGNMSQHVK KIHDPSVSPK VDPPKQYVCP EAGCGKVFKY ASKLRKHEDS  180
HGKSNLKILI FLLLCVLKTS NNIKLLCIYA VKLETVEALC LEPGCMKHFT NEKCLKEHIN  240
TCHQHIVCEI CGTKQLKKNI KRHLRTHEEG PTSERVKCEF KDCQHTFSTR SNLVQHIKVA  300
HLGDRPFSCG IPGCGMKFAF KHVRDRHEKS GCHVYTPGDF VEADEQFRSR PRGGRKIKLP  360
VFEDIMRKRI TPPSGTDRVF NQGSEYLSWL LSVESDDEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-156518119129PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-156518119129PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349357RPRGGRKIK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453639.10.0PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-119TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3YMZ90.0A0A1S3YMZ9_TOBAC; transcription factor IIIA-like isoform X2
STRINGXP_009592258.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-104transcription factor IIIA