PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00152g02017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 652aa    MW: 73093.9 Da    PI: 9.844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00152g02017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08437236
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                              + W+t+E++ll+ avk++G ++W++++ +++ +R 
  Peinf101Scf00152g02017.1  4 KTWSTWEELLLAFAVKRHGLKDWESVSMELQ-NRI 37
                              57*****************************.774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.423155IPR017877Myb-like domain
SMARTSM007175.9E-4257IPR001005SANT/Myb domain
PfamPF002495.7E-7437IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-7478IPR009057Homeodomain-like
CDDcd001672.61E-5554No hitNo description
Gene3DG3DSA:1.10.10.603.5E-5556IPR009057Homeodomain-like
SMARTSM002977.0E-17283392IPR001487Bromodomain
SuperFamilySSF473707.33E-18291389IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.8E-16292394IPR001487Bromodomain
CDDcd043691.42E-15294387No hitNo description
PfamPF004391.1E-10298377IPR001487Bromodomain
PROSITE profilePS5001412.264302373IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MEEKTWSTWE ELLLAFAVKR HGLKDWESVS MELQNRISSS LFTPQICKDK YHHLRRRFIT  60
FHDDDEKINA HDELEEDVTI PWIEELRQLR VAELKQEVQR YDLSIQSLQL KVKKMEEERE  120
QSLKEEGEKP DLDDVKEERS QNDKNSGADT KPDDFTGKPV SSEDSDRENR SCNESNSTEN  180
KRTGVKNEPD LVKPVQEVVI IKPVSEEDSC NDSTSSDKHE EEKKIVASGD DSGDLRGDDS  240
VSESKEAGTK ESSDVQSTAS LSKRKKRSSG GGDAAGTGSP AIGIIIKTAK SEPLIEFLDI  300
IRSHKRGSVF KRRLDSQKTD KYKNMIRQHM DLEMVQARID EGSYCSCPAK FYLDLLLIFN  360
NAIVYFPKSS PESTAANELR GIVMEELKKN RTQSKDQSPG PEPGPGPVMI QPKPELERSD  420
SLLAKHKSTA PIVVCRKRSS ISAKAAASGN NSKPEKQADI KPPLNPKPPI KSSSNEEDSS  480
IKLGIKEKPV TGVRSMRRSS KGRPTNASQS NTNQNTNIKQ TTSSNTEKKE DAKPEKKKEE  540
AKKRGAAADF LKRIKKNSPT KGTLMEALKN PTEEVVVKGN KREPQKKKVD ERRETPVRRG  600
GGGGGGKEEG SPSKRGRPPK RGGRETAQEK RVRENSEKQD DSSKRPKKRS RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1598606RGGGGGGGK
2643651KRPKKRSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-141HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500778.10.0PREDICTED: bromodomain-containing protein DDB_G0270170-like
TrEMBLA0A1S4CHY20.0A0A1S4CHY2_TOBAC; bromodomain-containing protein DDB_G0270170-like
STRINGXP_009602840.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-79DNA-binding bromodomain-containing protein