PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00146g03028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 231aa MW: 27029.4 Da PI: 5.9289 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.2e-15 | 110 | 188 | 10 | 99 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k+g + +p f+ ++ +g+++ + + ++g++W+vkl ++++ +++GW eF+++ +L++g ++vF+++g++ef Peinf101Scf00146g03028.1 110 GFKNG-IKIPIGFL-KYlEGQEKH--EHAILRRNGKEWQVKL--NGHR----FEEGWAEFAEERDLQVGHMLVFRHEGDMEF--E 182 55555.99******.555766433..5777789*********..7777....9***********************999999..9 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Peinf101Scf00146g03028.1 183 VSIFDS 188 999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 7.02 | 1 | 87 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-8 | 4 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-9 | 12 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-22 | 97 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-20 | 97 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 100 | 189 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.65E-16 | 101 | 187 | No hit | No description |
SMART | SM01019 | 1.5E-14 | 103 | 189 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 112 | 188 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MFRVLKSVVI IFLQKIPKAF FKYLDGHIQE HAILRSAGKE WRVKVNGQLL EDGWEKFAED 60 HDLQQTQQKN QSSTSSHHKR LNYLNEEADK DMPLDLPPKN PHFFKPIVPG FKNGIKIPIG 120 FLKYLEGQEK HEHAILRRNG KEWQVKLNGH RFEEGWAEFA EERDLQVGHM LVFRHEGDME 180 FEVSIFDSSQ CNTEYVQHQQ EEEEETAKKS DMEEKAKIIS SEEAFPNVEA A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168737.1 | 8e-52 | PREDICTED: B3 domain-containing protein REM10-like isoform X6 | ||||
Refseq | XP_018623217.1 | 4e-52 | PREDICTED: B3 domain-containing protein REM5-like isoform X1 | ||||
Refseq | XP_018623218.1 | 2e-52 | PREDICTED: B3 domain-containing protein REM5-like isoform X2 | ||||
TrEMBL | A0A2G3BQR5 | 6e-52 | A0A2G3BQR5_CAPCH; Uncharacterized protein | ||||
STRING | XP_009792889.1 | 2e-50 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 4e-28 | B3 family protein |