PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00146g02030.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 522aa    MW: 60384.4 Da    PI: 9.6867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00146g02030.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-1419951299
                              HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                              k + l +p  f+ ++ +g k+e    +l+   +++W vkl  ++++    l++GW++F+++++L  gD++vF+++g+++f   v++f
  Peinf101Scf00146g02030.1 19 K-NGLKIPTGFL-KYlKGHKHE--RAVLRRGCNKKWLVKL--NGRR----LEDGWEKFAEEHDLHLGDMLVFRHEGDMGF--DVSIF 93
                              4.45********.555666544..59**************..8888....**************************9***..99999 PP

                              -S CS
                        B3 98 rk 99
                              ++
  Peinf101Scf00146g02030.1 94 DS 95
                              86 PP
2B3551.4e-17162240586
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                               +++++ l++g l+lpk++a ++g+ + ++  l+l+de  rsW++kl+y+k+    ++++GW++Fv +n LkegD ++F+ + 
  Peinf101Scf00146g02030.1 162 TVREYCLSRGFLYLPKQCAFANGLTN-KKCNLILKDEGQRSWNLKLSYWKTV--AYIGDGWSKFVVDNCLKEGDRIMFEIVT 240
                               5678999************9998775.4569***************999997..88***********************654 PP
3B3482.2e-15286366487
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                +++++  k + l lp +fa+++g+++++  +++++de  rsW+v +    ++ ++ + +GW++F  angL +gD+  F+l+++
  Peinf101Scf00146g02030.1 286 STIKPYCIKDSVLFLPMNFAKSNGLINRK-CEMIMKDEAQRSWSVWI--GSRGHHFGILRGWNKFKAANGLHVGDTYKFELIKN 366
                               46689999999************999766.59***************..66666688889********************9986 PP
4B333.57.5e-113824423296
                               --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ++ +++++d + rsW+ +l    +++++++++GW eF  +n LkegD ++F+ ++ +++++ +++
  Peinf101Scf00146g02030.1 382 RKCEIIIRD-ERRSWTCNL--YSSGRQTYIGSGWCEFRIENCLKEGDCLMFEIVS-NGEKPIFRF 442
                               334788888.679******..8999999************************887.566677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-20698IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-19698IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.928796IPR003340B3 DNA binding domain
CDDcd100172.97E-14894No hitNo description
SMARTSM010192.9E-121096IPR003340B3 DNA binding domain
PfamPF023621.0E-101995IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19157249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-19157249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182158252IPR003340B3 DNA binding domain
SMARTSM010191.0E-18159252IPR003340B3 DNA binding domain
PfamPF023624.5E-15162240IPR003340B3 DNA binding domain
CDDcd100175.13E-17166237No hitNo description
SuperFamilySSF1019362.55E-17279377IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-16279368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-14282367No hitNo description
SMARTSM010192.3E-16283371IPR003340B3 DNA binding domain
PROSITE profilePS5086312.139283377IPR003340B3 DNA binding domain
PfamPF023621.3E-13285368IPR003340B3 DNA binding domain
CDDcd100172.58E-8369443No hitNo description
SMARTSM010190.022373446IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-11374442IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-12378443IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-9379443IPR003340B3 DNA binding domain
PROSITE profilePS508639.812385445IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MKVPLKKPQF YKPIVPGFKN GLKIPTGFLK YLKGHKHERA VLRRGCNKKW LVKLNGRRLE  60
DGWEKFAEEH DLHLGDMLVF RHEGDMGFDV SIFDSSKCDR EYPEYLQEKT QEAHTVEETF  120
KNFEFKEKRR PHDIKSSKKS SFHAKAATNH HKPLGQSRFV CTVREYCLSR GFLYLPKQCA  180
FANGLTNKKC NLILKDEGQR SWNLKLSYWK TVAYIGDGWS KFVVDNCLKE GDRIMFEIVT  240
PGETPIWKFQ VVANGETPMS KFQGTRDFIR KKHSASGEDA LPYFISTIKP YCIKDSVLFL  300
PMNFAKSNGL INRKCEMIMK DEAQRSWSVW IGSRGHHFGI LRGWNKFKAA NGLHVGDTYK  360
FELIKNGKIP EAYFHCNCLN NRKCEIIIRD ERRSWTCNLY SSGRQTYIGS GWCEFRIENC  420
LKEGDCLMFE IVSNGEKPIF RFYGNQSLQP EVKKKNLDAK RTSDKGLDFQ YQTLLAEPRI  480
TDLTIKISDV TAPKSQVAAS TYDDANPNFV STIQPYTISK HV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092835e-43AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9755205e-43HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804336.11e-169PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A1U7YQU11e-168A0A1U7YQU1_NICSY; B3 domain-containing protein REM10-like
STRINGXP_009804336.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-53B3 family protein