PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00145g23014.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 489aa    MW: 53689.8 Da    PI: 6.053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00145g23014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-163784148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+ Ed +lvd+++++G g+W+++ ++ g+ R++k+c++rw ++l
  Peinf101Scf00145g23014.1 37 KGPWTKAEDAILVDYIARHGEGNWSAVRKHSGLARCGKSCRLRWANHL 84
                              79******************************************9986 PP
2Myb_DNA-binding51.72.1e-1690133146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Peinf101Scf00145g23014.1  90 KGAFTPEEERLIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133
                               799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5663284IPR017930Myb domain
SuperFamilySSF466894.87E-3034131IPR009057Homeodomain-like
SMARTSM007177.1E-143686IPR001005SANT/Myb domain
PfamPF002499.8E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-233891IPR009057Homeodomain-like
CDDcd001671.13E-113984No hitNo description
PROSITE profilePS5129426.2785139IPR017930Myb domain
SMARTSM007171.3E-1689137IPR001005SANT/Myb domain
PfamPF002491.3E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2692138IPR009057Homeodomain-like
CDDcd001671.25E-1292133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MTSECVDRMT SKVGVDSPAV EEASGGGNAG GGVPLKKGPW TKAEDAILVD YIARHGEGNW  60
SAVRKHSGLA RCGKSCRLRW ANHLRPDLRK GAFTPEEERL IIELHAKMGN KWARMAAELP  120
GRTDNEIKNY WNTRIKRRQR AGMPMYPPDI CYQAFSENKQ NKELGTFSSA DSHPDFSPIN  180
SFEIPAEFKT LELSQQWYPP VLLDIATNSS LDIPATSLLA QGLNFSCNTR SFLSTMHPSK  240
RIRGLESWFS GLNVDFFQAC HQFENDGSLL AESLGYSSPH TDNLISVHHP SFSGVFTGSH  300
APLNGNSSSE PKWAKKLELP SLQTQMVSWG SPSPLPSLES YDTLIQLPPS EHTDSGSLSP  360
GNSGLLDAVL YESQTFRASK NNLHQETCDV VDDSCPDVQA TQWGTHSGPN SPLGHSAASV  420
FSEYTPIFGG SLHEPRSVAS LFGENGCKVK QEDVDLAPTD RNDDVSNHQI FAWTESCFAP  480
TVLVPQQNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32321381107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771204.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A1U7W9710.0A0A1U7W971_NICSY; transcription factor GAMYB-like isoform X1
STRINGXP_009771204.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-76myb domain protein 33