PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00129g04011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 23506.2 Da PI: 8.8153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F ++ L H++ H Peinf101Scf00129g04011.1 58 YECQYCSREFANSQALGGHQNAH 80 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.63E-6 | 55 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 56 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.175 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-5 | 58 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAEVLEFPSK PSKIPTSNGR LKLFGFNMTA VDEEADYTNT SSESPESGVF QPSDGRKYEC 60 QYCSREFANS QALGGHQNAH KKERQQLKRA QIQASRNAYM RNPISSAFAP PSHLLAPTGS 120 MMVPMAASSS PSWVYVPRAS PQFHMSHGCV FPTSSTSGRG VGNFQYTGSV ADSSLTSVKA 180 HSAKVNGPSM SRVSRADVGP NFDDAFGLDL HLSLAPAAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621927.1 | 1e-121 | PREDICTED: zinc finger protein 6-like | ||||
Refseq | XP_016489115.1 | 1e-121 | PREDICTED: zinc finger protein 6 | ||||
Swissprot | Q9C9H1 | 5e-56 | GIS3_ARATH; Zinc finger protein GIS3 | ||||
TrEMBL | A0A1S4BJP9 | 1e-119 | A0A1S4BJP9_TOBAC; zinc finger protein 6 | ||||
STRING | XP_009621927.1 | 1e-120 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2994 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 1e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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