PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00128g01015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25733.4 Da PI: 8.5703 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.2 | 3.5e-19 | 22 | 104 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +++++ l++g l +p +fa+++g+ + ++ +l+++de+ rsW++kl + ++ r+++++GW++Fv + g+kegD ++F+ + + + Peinf101Scf00128g01015.1 22 TIRPYCLSRGFLFIPAQFANANGLTN-KKCDLIIRDERQRSWDLKL--SSGKTRVYIGNGWRKFVADVGIKEGDRIMFEIVTSgE 103 678999****************8875.5569***************..99999**************************775434 PP E CS B3 89 e 89 Peinf101Scf00128g01015.1 104 A 104 4 PP | |||||||
2 | B3 | 37.9 | 3.1e-12 | 154 | 214 | 34 | 98 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++d + rsW+ +l +++++++++GW eF+ an LkegD ++F+ ++ +++++ ++++ Peinf101Scf00128g01015.1 154 CEIIIRD-ERRSWTCNL--FSCGRKTFIGSGWHEFCIANCLKEGDRLIFEIVS-NGEKPIFRLRG 214 3688788.679******..8999999************************887.66678888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-19 | 16 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-19 | 17 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.31 | 18 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-13 | 19 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-17 | 22 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.75E-15 | 26 | 97 | No hit | No description |
SMART | SM01019 | 5.5E-8 | 122 | 216 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.0E-14 | 130 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-12 | 136 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.4E-10 | 153 | 213 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.04E-9 | 154 | 213 | No hit | No description |
PROSITE profile | PS50863 | 10.616 | 155 | 215 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MQSSHAATDH HKPLGETHFE CTIRPYCLSR GFLFIPAQFA NANGLTNKKC DLIIRDERQR 60 SWDLKLSSGK TRVYIGNGWR KFVADVGIKE GDRIMFEIVT SGEAPQWKFK VVTNGETPMK 120 KFQKASEEMH LSHPHFICTI QPYSLSNCLN DRKCEIIIRD ERRSWTCNLF SCGRKTFIGS 180 GWHEFCIANC LKEGDRLIFE IVSNGEKPIF RLRGNSTSPE ENIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016549278.1 | 3e-75 | PREDICTED: B3 domain-containing protein REM17-like isoform X7 | ||||
TrEMBL | A0A1U8EQ38 | 7e-74 | A0A1U8EQ38_CAPAN; B3 domain-containing protein REM17-like isoform X7 | ||||
STRING | XP_009781505.1 | 7e-73 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 7e-22 | B3 family protein |