PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00128g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 233aa MW: 26688.2 Da PI: 9.3482 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.5 | 7.7e-11 | 72 | 146 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +++++ ++ ++lp fa+++g+++++ +++l de+ rsW+v l r ++G+ F kan +++gD+ F+l+++ s Peinf101Scf00128g00021.1 72 TIKPYIITNTVFYLPMAFAKSIGLINRN--EMILVDEKWRSWSVHL--R--------QTGTHFFMKANSVQVGDSYKFELINNgS 144 56888999999************99655..8***************..3........45888899***************98766 PP EE CS B3 89 ef 90 ++ Peinf101Scf00128g00021.1 145 DG 146 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-11 | 61 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-13 | 62 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-9 | 67 | 144 | No hit | No description |
SMART | SM01019 | 4.9E-9 | 68 | 156 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-9 | 70 | 147 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEKNQSGNFM PEVKKNNLET KSQVPGPRIS DKGQYFQEQI DLNIVTSDVT APKSQVTAST 60 SSDEANPYFI STIKPYIITN TVFYLPMAFA KSIGLINRNE MILVDEKWRS WSVHLRQTGT 120 HFFMKANSVQ VGDSYKFELI NNGSDGTKPI THFYCEYFFV SLKFRDTIIC RLSIVFEKLV 180 GKYSGKDDKH HRSHRHDKAK YSFSLSTGIA SYTHAMKDQE NPYKEPSDLK NPS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016454037.1 | 6e-38 | PREDICTED: B3 domain-containing protein REM10-like isoform X2 | ||||
TrEMBL | A0A1S3YPR5 | 1e-36 | A0A1S3YPR5_TOBAC; B3 domain-containing protein REM10-like isoform X2 | ||||
STRING | XP_009781490.1 | 3e-36 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-09 | B3 family protein |