PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00126g02006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 778aa MW: 85583.1 Da PI: 6.1146

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00126g02006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.8e-20	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L +rqVk+WFqNrR+++k Peinf101Scf00126g02006.1 112 KKRYHRHTPKQIQELEALFKECPHPDEKQRLELSKRLCLATRQVKFWFQNRRTQMK 167 688999***********************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-21	97	169	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.43E-20	97	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.556	109	169	IPR001356	Homeobox domain
SMART	SM00389	4.0E-17	110	173	IPR001356	Homeobox domain
Pfam	PF00046	5.6E-18	112	167	IPR001356	Homeobox domain
CDD	cd00086	4.64E-17	114	169	No hit	No description
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	33.082	295	521	IPR002913	START domain
SuperFamily	SSF55961	8.55E-25	297	518	No hit	No description
CDD	cd08875	2.53E-106	299	517	No hit	No description
SMART	SM00234	1.0E-37	304	518	IPR002913	START domain
Pfam	PF01852	8.1E-44	304	518	IPR002913	START domain
SuperFamily	SSF55961	1.53E-24	537	764	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MNFGGFLDSS GDGGSARIFT NSNNNNMSIS TIAQSMSKSM FNSPGLSLAL QTGIEGQGEI 60 ARMPENYDTN TNNSVGRRGR DEEQESRSES DNLEGASGDD QDTDEKPPKK KKKRYHRHTP 120 KQIQELEALF KECPHPDEKQ RLELSKRLCL ATRQVKFWFQ NRRTQMKTQL ERHENSLLRQ 180 ENDRLRAENM SVREALRNPM CTNCGGPAII GEISIEEQRL RIENSRLKDE LDRVCTLAGK 240 FLGRPISSMA PLALPNSSLE LGVGNNGFEV LSNVQSTIPL GTSEFGVGIS NGIEISIERS 300 MYLELALAAM DELVKMAQTD DTLWLRNIEG GTEILNHEEY LRTFTPCIGM RPNTFVSEAS 360 RETGMVIINS LALVETLMDS NKWAEMFPCL IARTSTTNVV SSGVGGTRNG ALQLMHAELQ 420 VLSPLVPIRE VNFLRFCKQH AEGVWAVVDV SIDTIRDTSG APTFQNYRRL PSGCVVTWVE 480 HAEYDENVVH QLYRPLISTG MGFGAQRWVA TLQHQCECLA ILMSSSVPSR DHTALTPSGR 540 RSMLKLAQRM TNNFCSGVCA SSIHKWNKLC IGNVDEDVRV MTRKSVDDPG EPSGIVLSAA 600 TSVWLPVSPQ RLFEFLRDER LRSEWDILSN GGPMQEIAHI AKGQDHGNCV SLLRASGTNT 660 NQSSMLILQE TCIDPAGSVV VYAPVDIPAM HVVMNGGDSA YVALLPSGFS IVPDGPGSRG 720 PKIGGPDQRV SGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALHCES

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MNFGGFLDSS GDGGSARIFT NSNNNNMSIS TIAQSMSKSM FNSPGLSLAL QTGIEGQGEI  60
ARMPENYDTN TNNSVGRRGR DEEQESRSES DNLEGASGDD QDTDEKPPKK KKKRYHRHTP  120
KQIQELEALF KECPHPDEKQ RLELSKRLCL ATRQVKFWFQ NRRTQMKTQL ERHENSLLRQ  180
ENDRLRAENM SVREALRNPM CTNCGGPAII GEISIEEQRL RIENSRLKDE LDRVCTLAGK  240
FLGRPISSMA PLALPNSSLE LGVGNNGFEV LSNVQSTIPL GTSEFGVGIS NGIEISIERS  300
MYLELALAAM DELVKMAQTD DTLWLRNIEG GTEILNHEEY LRTFTPCIGM RPNTFVSEAS  360
RETGMVIINS LALVETLMDS NKWAEMFPCL IARTSTTNVV SSGVGGTRNG ALQLMHAELQ  420
VLSPLVPIRE VNFLRFCKQH AEGVWAVVDV SIDTIRDTSG APTFQNYRRL PSGCVVTWVE  480
HAEYDENVVH QLYRPLISTG MGFGAQRWVA TLQHQCECLA ILMSSSVPSR DHTALTPSGR  540
RSMLKLAQRM TNNFCSGVCA SSIHKWNKLC IGNVDEDVRV MTRKSVDDPG EPSGIVLSAA  600
TSVWLPVSPQ RLFEFLRDER LRSEWDILSN GGPMQEIAHI AKGQDHGNCV SLLRASGTNT  660
NQSSMLILQE TCIDPAGSVV VYAPVDIPAM HVVMNGGDSA YVALLPSGFS IVPDGPGSRG  720
PKIGGPDQRV SGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALHCES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234657.2	0.0	cutin deficient 2
Refseq	XP_015059298.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A3Q7EKE6	0.0	A0A3Q7EKE6_SOLLC; Uncharacterized protein
STRING	Solyc01g091630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]