PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00120g14032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 327aa MW: 36507.8 Da PI: 8.9343 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.3 | 4.1e-18 | 11 | 58 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i ++ r vtfskRr+g++KKA+EL ++++a+va ++fs+tgk y+ Peinf101Scf00120g14032.1 11 KKITKDTSRMVTFSKRRQGLFKKASELETMTGARVATVVFSPTGKPYT 58 678999**************************************9876 PP | |||||||
2 | SRF-TF | 56.3 | 4.1e-18 | 184 | 231 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+i ++ r vtfskRr+g++KKA+EL ++++a+va ++fs+tgk y+ Peinf101Scf00120g14032.1 184 KKITKDTSRMVTFSKRRQGLFKKASELETMTGARVATVVFSPTGKPYT 231 678999**************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.194 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-24 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-20 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-14 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-23 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.64E-18 | 18 | 60 | No hit | No description |
PRINTS | PR00404 | 1.5E-14 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-14 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.194 | 176 | 236 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-24 | 176 | 235 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-20 | 177 | 236 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-23 | 185 | 231 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.64E-18 | 191 | 233 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGTGKKKIDI KKITKDTSRM VTFSKRRQGL FKKASELETM TGARVATVVF SPTGKPYTSG 60 NVSYAIERHF CGSTDQPSSS HHSSSIDDVS GGSSTSNSAS RNGLYDWLED IDVEECQNLN 120 ELLLLKEQLE GTRKKLASIE DSESFQALFM LLESLLQFIC LWEQLLFPIL HLKMGTGKKK 180 IDIKKITKDT SRMVTFSKRR QGLFKKASEL ETMTGARVAT VVFSPTGKPY TSGNVSYAIE 240 RHFCGSTDQP SSSHHSSSID DISGGIILLL LMMFLVAPRR RIRPRGMDID VEECQNLNEL 300 LLLKEQLEGT RKKLASIEDS ESFQALF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581849.1 | 3e-61 | PREDICTED: agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A2G3BTX0 | 7e-62 | A0A2G3BTX0_CAPCH; Agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009796162.1 | 2e-60 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-12 | AGAMOUS-like 29 |