PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00113g04004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 172aa MW: 19432.6 Da PI: 4.6335 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.2e-08 | 19 | 47 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +g+WT+eEd ll ++++++G g W+ ++ Peinf101Scf00113g04004.1 19 KGAWTEEEDVLLRKCIEKFGEGKWHQVPV 47 79**********************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 14 | 56 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 17 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.94E-7 | 18 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 19 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-5 | 21 | 45 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
CDPHIMNTTI PKSSGLVRKG AWTEEEDVLL RKCIEKFGEG KWHQVPVRAV RPRPRTFSNS 60 AQNISWCSNK SITNSTIDTD GSNNECIRIN DKKPMAEVSR DDGVQWWTSL LANCNENDEP 120 AVENMSYDKL PSLLHEEISP PMNGGISNCM QEGQSGWDDF SVDIDHLWNL LN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ428101 | 0.0 | HQ428101.1 Petunia x hybrida cultivar V26 PURPLE HAZE gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240653.1 | 4e-37 | PREDICTED: transcription factor MYB113-like | ||||
Refseq | XP_019240654.1 | 4e-37 | PREDICTED: transcription factor MYB113-like | ||||
TrEMBL | E9N663 | 4e-83 | E9N663_PETHY; PURPLE HAZE | ||||
STRING | XP_009626596.1 | 1e-32 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 8e-11 | myb domain protein 114 |