PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00113g02010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 26463.1 Da PI: 9.1124 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 14 | 80 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd ll ++++++G g +W++Ia +++ gRt++++k++w++ Peinf101Scf00113g02010.1 14 KGAWAEEEDILLRKCIEKYGEGkwhqvpvradyllikivsffftRWSLIAGRLP-GRTANDVKNYWNT 80 799***************************************************.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.724 | 9 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-8 | 12 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.35E-14 | 13 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 13 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-9 | 16 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-12 | 45 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 46 | 81 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MNTSVFTSSG VLRKGAWAEE EDILLRKCIE KYGEGKWHQV PVRADYLLIK IVSFFFTRWS 60 LIAGRLPGRT ANDVKNYWNT QLLRRSNFAP PQQHQRKCTK AIKIMAKNVI IRPQPRNLSK 120 LAKNNVSNYS TIHKDEHSKQ KMFIEKPTAA EVVSRDNNVE WWTNLLLDNC NGFEKAAPES 180 TSAVKNIESL LNEELLSTSI NGGTNYPMQE TGDMGWSDFS IDSDLWELLL Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ428109 | 0.0 | HQ428109.1 Petunia x hybrida cultivar W59 DEEP PURPLE gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240653.1 | 8e-60 | PREDICTED: transcription factor MYB113-like | ||||
Refseq | XP_019240654.1 | 8e-60 | PREDICTED: transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 6e-28 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E9N670 | 1e-153 | E9N670_PETHY; DEEP PURPLE | ||||
STRING | XP_009626596.1 | 7e-57 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-30 | myb domain protein 113 |
Publications ? help Back to Top | |||
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