PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00101g01037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25843.5 Da PI: 9.4805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.9 | 1.3e-11 | 117 | 203 | 1 | 80 |
EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+lt+sdv ++ grl l ++ +++ +++ +++++++ d+ g +e++++ +++ +++vl + W++F+k+++Lke D Peinf101Scf00101g01037.1 117 FVKQLTKSDVDEHqGRLLLNNEDVRREllpllsNEDLASGIKVKTFDQLGHCYEMTFKTWGNYKTHVLLGSWRQFCKDHELKEHD 201 99**********9899********999***99955666899999999***999999988************************** PP EE CS B3 79 fv 80 v Peinf101Scf00101g01037.1 202 CV 203 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 2.2E-7 | 117 | 203 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-16 | 117 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.43E-15 | 117 | 203 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-15 | 117 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MELGKEDISA ALLLSWLKYT KITEQDVQSF ETILQKHSHS LNPTILEAKK FKKLEKSKRE 60 HLFDKNQQTP QTPKACSTRN YKTSPKKIKI SQNSTEFPRF PPVENLEGLI GKCSNPFVKQ 120 LTKSDVDEHQ GRLLLNNEDV RRELLPLLSN EDLASGIKVK TFDQLGHCYE MTFKTWGNYK 180 THVLLGSWRQ FCKDHELKEH DCVNGYAYYT PQLQRPKTKS SNS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353478.1 | 2e-58 | PREDICTED: B3 domain-containing protein At1g05920-like | ||||
TrEMBL | A0A314KM32 | 1e-59 | A0A314KM32_NICAT; Putative b3 domain-containing protein | ||||
STRING | PGSC0003DMT400000991 | 6e-58 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6430 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20600.1 | 4e-16 | B3 family protein |