PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00094g03016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 266aa MW: 30284.2 Da PI: 4.5366

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00094g03016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41	4.4e-13	7	51	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+W +eEd l++ vk++G+++W++I ++ + Rt+k+c++rw+ Peinf101Scf00094g03016.1 7 KGPWKEEEDAVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWR 51 79***********************8887799********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.104	2	58	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-18	5	53	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-7	6	56	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.02E-13	6	55	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-11	7	51	IPR001005	SANT/Myb domain
CDD	cd00167	3.58E-12	9	51	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSEIIKKGPW KEEEDAVLIK HVKKYGPRDW SSIRSKGLLQ RTGKSCRLRW RWYAYAFSPN 60 SYLHYSSLST CQLVLLSLNF QEPKLSSPAE ERSLPMSQCC SSSYMNNSDT INMVPLPELE 120 NSTSLPFEPN LLQFEFTPND KNYQYIGTQM SLSFPQIPLQ TDFGHPLGSQ ELPMKLEETD 180 FLDFFGQLST ASDIGNVQVP LVPLCSGPDK SSEIVVKREM DSPLTQDSFI DDFPMDVFDL 240 IDPLPSPSDW WNSDLSISER KKGNCN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630342.1	3e-89	PREDICTED: transcription factor GAMYB-like
Refseq	XP_016497849.1	3e-89	PREDICTED: transcription factor GAMYB-like
TrEMBL	A0A1S4CA66	7e-88	A0A1S4CA66_TOBAC; transcription factor GAMYB-like
STRING	XP_009630342.1	1e-88	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4207	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	2e-24	MYB family protein