PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00073g21032.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 1554aa    MW: 169039 Da    PI: 6.1631
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00073g21032.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-0615311554226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                ++++C+ f+++G Ck G++C + H+
  Peinf101Scf00073g21032.1 1531 GQRICK-FYESGRCKKGASCDYLHP 1554
                                5799**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.88E-878132IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-878140IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.56485151IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-787133IPR001965Zinc finger, PHD-type
CDDcd155686.57E-2087132No hitNo description
PROSITE patternPS01359088148IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475922.62E-20337415IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.0E-25338422IPR003121SWIB/MDM2 domain
PfamPF022012.2E-14341414IPR003121SWIB/MDM2 domain
SMARTSM001514.4E-4341419IPR019835SWIB domain
SMARTSM007191.1E-32475588IPR004343Plus-3 domain
PROSITE profilePS5136014.356475613IPR004343Plus-3 domain
SuperFamilySSF1590421.57E-21476582IPR004343Plus-3 domain
PfamPF031265.9E-18481574IPR004343Plus-3 domain
SuperFamilySSF552772.75E-14723778IPR003169GYF domain
PROSITE profilePS5082914.653726779IPR003169GYF domain
CDDcd000722.14E-15726782No hitNo description
SMARTSM004443.2E-10727781IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.4E-15728779IPR003169GYF domain
PfamPF022131.5E-9729770IPR003169GYF domain
SuperFamilySSF902295.65E-615291553IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.315291554IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-415331553IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1554 aa     Download sequence    Send to blast
MEGTSSSSGM YNPSIQTSSV QHLNDFQLPG GPVQVAGVAP TTAAAGGVGN SVVIGEKRKR  60
GRPPRNQGAV PVKPPPMKKQ REEEEDVCFI CFDGGSLVLC DRKGCPKAYH PACIKRDEAF  120
FRSKAKWNCG WHICSVCQKA SHYLCYTCTY SLCKACTKNA DYLCVRGNKG FCSTCMRTIM  180
LIENKDQANK EMVDFDDKGS WEYLFKVYWV ILKEKLALTL DELVQAKNPW KETDAVHGKR  240
QLMRYGHYVA NDGKGIAGKS IDHLEMKKPM ELLEQSRNDP PNTESRTIAE SNNVSTLSST  300
PQSQLTKPVE KLEFQNEDCL RTKQGSVAMH TSVNGCMAWA SKELLDFVAH MKGGDTSAIS  360
QFDVQALLLD YIKRNNLRDP RQKSQIICDM RLKSLFGKPR VGHIEMLKLL EFHFMIKEES  420
EKSAFIPAGI VGTVTGHVKP DNSDISSLMN KTKKRKTRKN GEVKMAHVNL DEYAAIDAHN  480
MNFLYLRRDL MENLAEDVEK FHDKVVGSVV RIRIPGNDQK QEIYRLVHVV GTCKSSEPYK  540
IRDKTVDVLL EVLNLDKKEA VSIDSISNQD FCENIDIEYE DFLDNPTLRE CVEKLELLKT  600
PEERQRRLLE IPEVHADPKM DPNYESESND RESNDKRKVE YPAPRCTRIS RRGEKPVSSG  660
SLVKEEGSIM ARVRMSEKGE ACGTNILDKL GNQLTADQAV DRSGSEASLA SVTTANSSSG  720
NNCETDKLWH YRDPTGKIQG PFSVIQLRKW NTSGLFPLDM RIWTNHEHDD SILLTNALKG  780
IFHKAPQLHG KTSSQSLEAA ASDRMSIRWS ENANGTGGQN GKKEAPGHLH NANNHSNGNT  840
ELTRMNGLSP SFPQSLDSLK GNNPCSGKPQ MSISVPPSSQ REVVLALPHQ ERGHENDNYH  900
SVADHVTSKS RGNTMSQIND GCGHNTQSKS RQAAGQNKGS FTSNRCSNNL DSGSSFASAN  960
SYEQKAKVNI PDLPSPTPET SYGELEAEAA EKLLLLSSVI PSDIHDLPSP TPNSNREAQG  1020
EDAAETKESV PSVLPVQESG HRWSSASNLV IDGSQLCEVA DECGRNSPAA KPATEELDAG  1080
HASVSSLQPA EAVGDHVATP TSNADQLTSK PSAEELDSGL VSASSLKLAE AVDDHVPTPT  1140
SNADQLTSKP SAEELDSGLV SASSLKPAEA VDDHVPIPTS NANQLIVKPS TQEWDSGLVS  1200
ISSLKPAEAV GDDVATPASN ADQLNHTSLS LPVSNFFSEP IEFSTLAEES VSDLLAEVDA  1260
MESLNQNGMG SPTSAMRCGD EMISGCKDDC FSPIEELSPT HDPVRSDALS STGDLHLPCQ  1320
STVTDETVRA SRVDAFDPLK RSSGNSSTSS EGETKSADVL FSQRVSGSNI PAPCTTRETT  1380
AYPAMEVSCS TAPAADVFFS QRVSGSDIPA PCTTRETTAY PAMGRSTGYE GMNSGRGAAP  1440
GNMTWGGTIQ GYANVGHGGS IGGAWGNSHM NRGAPFTGNP VWDSQRRYAG ERAGGPRALQ  1500
GGDTGFDRGR SSWNRQQPYG GGGYSRPPPR GQRICKFYES GRCKKGASCD YLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-13811541181Histone-lysine N-methyltransferase NSD3
4gnd_C4e-13811541181Histone-lysine N-methyltransferase NSD3
4gne_A4e-13811541181Histone-lysine N-methyltransferase NSD3
4gnf_A4e-13811541181Histone-lysine N-methyltransferase NSD3
4gng_A4e-13811541181Histone-lysine N-methyltransferase NSD3
4gng_D4e-13811541181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474357.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X3
TrEMBLA0A1S4ACH60.0A0A1S4ACH6_TOBAC; zinc finger CCCH domain-containing protein 44-like isoform X3
STRINGXP_009600608.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding