PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00073g19011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 38112.6 Da PI: 6.5953 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 269 | 303 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Peinf101Scf00073g19011.1 269 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 303 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-16 | 263 | 317 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.767 | 263 | 299 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-14 | 265 | 326 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-15 | 267 | 301 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.04E-13 | 268 | 316 | No hit | No description |
Pfam | PF00320 | 1.5E-16 | 269 | 303 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 269 | 294 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MLYQTQHHSF FSSSLSSSSS SLLPSSSSSL QDMESALKSS CMLPSELKLT QKEAIHGDDM 60 WATTGQNVVS GDDFFVDDLL DFSNGFVENE EEMKQEDENN NVVKETDDKD KVVISPPVVK 120 QEDFASPLPV SELTVPGDDL ESLEWLSHFV EDSFCGYSLT GKLPVKPVEN GENPVQEKTC 180 FTTPVQTKAR TKRGRTSVRV WPTCSGSLTE SSSSSSSSST TTMSSSPMNP WMFYPTPVHT 240 AESAGKPVVK KAKKKPGTGN GPAQHARRCS HCGVQKTPQW RAGPMGAKTL CNACGVRFKS 300 GRLLPEYRPA CSPTFSSELH SNNHRKVLEM RRKKEGDESG LAQPVQSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 255 | VKKAKKKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761911.1 | 1e-131 | PREDICTED: GATA transcription factor 5 | ||||
Refseq | XP_016446822.1 | 1e-131 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 3e-76 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A1S3Y4M4 | 1e-129 | A0A1S3Y4M4_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7VAA2 | 1e-129 | A0A1U7VAA2_NICSY; GATA transcription factor | ||||
STRING | XP_009761911.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-67 | GATA transcription factor 5 |