PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00073g19011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 348aa    MW: 38112.6 Da    PI: 6.5953
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00073g19011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18269303135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Peinf101Scf00073g19011.1 269 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 303
                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-16263317IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.767263299IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14265326No hitNo description
Gene3DG3DSA:3.30.50.108.1E-15267301IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-13268316No hitNo description
PfamPF003201.5E-16269303IPR000679Zinc finger, GATA-type
PROSITE patternPS003440269294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLYQTQHHSF FSSSLSSSSS SLLPSSSSSL QDMESALKSS CMLPSELKLT QKEAIHGDDM  60
WATTGQNVVS GDDFFVDDLL DFSNGFVENE EEMKQEDENN NVVKETDDKD KVVISPPVVK  120
QEDFASPLPV SELTVPGDDL ESLEWLSHFV EDSFCGYSLT GKLPVKPVEN GENPVQEKTC  180
FTTPVQTKAR TKRGRTSVRV WPTCSGSLTE SSSSSSSSST TTMSSSPMNP WMFYPTPVHT  240
AESAGKPVVK KAKKKPGTGN GPAQHARRCS HCGVQKTPQW RAGPMGAKTL CNACGVRFKS  300
GRLLPEYRPA CSPTFSSELH SNNHRKVLEM RRKKEGDESG LAQPVQSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255VKKAKKKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761911.11e-131PREDICTED: GATA transcription factor 5
RefseqXP_016446822.11e-131PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH573e-76GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S3Y4M41e-129A0A1S3Y4M4_TOBAC; GATA transcription factor
TrEMBLA0A1U7VAA21e-129A0A1U7VAA2_NICSY; GATA transcription factor
STRINGXP_009761911.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-67GATA transcription factor 5