PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00073g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 120aa MW: 13770.7 Da PI: 7.8787 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.1e-10 | 50 | 93 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E +++ +a + + ++ +W Ia+++g g++ +++k ++ Peinf101Scf00073g00009.1 50 AWSPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSIEEVKQHY 93 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.29 | 46 | 101 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-8 | 47 | 99 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.25E-13 | 50 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-9 | 50 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.84E-9 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 50 | 94 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MTTGMSFEND RFPLLHHIVL LVVSKEDGSS LILLFHLFQN QTMASNSLSA WSPKENKKFE 60 QALAVYDKDT PDRWQNIAKY VGGKSIEEVK QHYAILIEDL KHIESGDVPF PKYRSGGKYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 43 | 117 | 1 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603278.1 | 2e-47 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_016451407.1 | 2e-47 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_016451408.1 | 2e-47 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_018627017.1 | 2e-47 | PREDICTED: protein RADIALIS-like 1 | ||||
Refseq | XP_019242704.1 | 2e-47 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 3e-31 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A1J6J417 | 4e-46 | A0A1J6J417_NICAT; Protein radialis-like 1 | ||||
TrEMBL | A0A1S3YH96 | 4e-46 | A0A1S3YH96_TOBAC; protein RADIALIS-like 1 | ||||
STRING | XP_009603278.1 | 6e-47 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-33 | RAD-like 6 |
Publications ? help Back to Top | |||
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