PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00071g10004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27433.2 Da PI: 6.167 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.5 | 3.5e-13 | 14 | 50 | 6 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +s r+ + kR + ++KKAeE S+LCd++vav+if + Peinf101Scf00071g10004.1 14 ESVRNSILNKRVASLFKKAEEFSILCDVKVAVVIFNP 50 555666799*************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.7E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.059 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-16 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-13 | 14 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTRKRLNNTR NYSESVRNSI LNKRVASLFK KAEEFSILCD VKVAVVIFNP GKVEPIAWPS 60 YDQAKVIITR YVSFSEAERL KKLVRHETYL LEKVKAQEEN IIKIEKMNEE KEMELLFNQL 120 VEGKNINDLD AMQLKGLLKL SAKKIAKLAE RKKQLNQQNQ LKAKPANENE NIANQSDGLH 180 SVMSSESLME DLINDSWFIE TMATNNYCLD FESSSGIELA PAEGNDSNAG ESNDAHHKNI 240 D |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794692.1 | 1e-97 | PREDICTED: MADS-box protein AGL24-like | ||||
Refseq | XP_016468130.1 | 1e-97 | PREDICTED: MADS-box protein AGL71-like | ||||
TrEMBL | A0A1S3ZUN3 | 3e-96 | A0A1S3ZUN3_TOBAC; MADS-box protein AGL71-like | ||||
TrEMBL | A0A1U7XRI7 | 3e-96 | A0A1U7XRI7_NICSY; MADS-box protein AGL24-like | ||||
STRING | XP_009794692.1 | 6e-97 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-16 | M-type_MADS family protein |