PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00066g02069.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 478aa    MW: 55513.2 Da    PI: 8.3014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00066g02069.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-132741899
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              +p  f++  +g++ee ++  +  + g++W vkl  ++++    l++GW +F+++++L+ gD +vF+++g++ef   v++f++
  Peinf101Scf00066g02069.1  2 IPIGFLKFLNGEEEE-QEHAVLRRCGKKWLVKL--KGGR----LEDGWPKFAEEHDLQLGDLLVFRHEGNMEF--EVTIFDS 74
                              788888766666555.57888899*********..7777....*************************99999..9999986 PP

2B348.12.1e-15131219698
                               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++s+ l++g l+lp +fa+++g+   +++ l+++de+ rsW+++l  + + g+ ++l+  W eF  an+Lk gD ++F+++  ++
  Peinf101Scf00066g02069.1 131 IRSYLLTKGYLRLPTRFARKNGLFD-KKFALIIRDERQRSWNFRL--NTSHGQvHMLG-RWGEFRAANDLKLGDNIMFEVVT-NG 210
                               68999****************7764.5689***************..88888846666.9*******************876.55 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                               +++  k+++
  Peinf101Scf00066g02069.1 211 EKPIWKFVD 219
                               556666655 PP

3B356.45.6e-18251330589
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++s+ l++g l+l k+fa ++g+ k++   l+++de+ rsW+++l    +++++++++GW+eF  an+Lk+gD v+F+++ + +
  Peinf101Scf00066g02069.1 251 TVRSYCLSQGFLRLIKQFAHANGLTKKK--SLIIRDERQRSWDLRL--VTYGSQVFIKGGWSEFHVANDLKVGDHVMFEVVTN-G 330
                               56899*****************999766..6***************..999999*************************8764.3 PP

4B352.49.4e-17390470588
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               +++++ l+ + +++pk+f+ e+g+ + ++ +++++de+ rsW+vk+  r  ++ + ++ GW eF +an LkegD v F+++++ 
  Peinf101Scf00066g02069.1 390 TIKPYCLTYDFFYIPKEFVLENGLTN-KKCDVIIRDEWKRSWNVKI--RSFGSDVCIRVGWHEFRDANCLKEGDCVKFEVVSNG 470
                               567899999*************8885.4569***************..888889*************************88753 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.648175IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-15277IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-10274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15277IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-11273No hitNo description
SMARTSM010191.6E-6675IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-15121214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-16123218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.73126220IPR003340B3 DNA binding domain
SMARTSM010195.0E-13127221IPR003340B3 DNA binding domain
PfamPF023622.6E-13131218IPR003340B3 DNA binding domain
CDDcd100171.09E-11131205No hitNo description
Gene3DG3DSA:2.40.330.109.2E-19245337IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18246338IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-14247340IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943247340IPR003340B3 DNA binding domain
PfamPF023621.1E-15250332IPR003340B3 DNA binding domain
CDDcd100173.95E-12253325No hitNo description
Gene3DG3DSA:2.40.330.103.0E-18384473IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-18384477IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-14386475IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801386478IPR003340B3 DNA binding domain
PfamPF023621.5E-14390471IPR003340B3 DNA binding domain
CDDcd100176.88E-13391474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
KIPIGFLKFL NGEEEEQEHA VLRRCGKKWL VKLKGGRLED GWPKFAEEHD LQLGDLLVFR  60
HEGNMEFEVT IFDSSQCGRE YTEYLQEEEE EEEETSKKDE SNGSEIMLPS KANFHSAEAA  120
TSGQSHFEWT IRSYLLTKGY LRLPTRFARK NGLFDKKFAL IIRDERQRSW NFRLNTSHGQ  180
VHMLGRWGEF RAANDLKLGD NIMFEVVTNG EKPIWKFVDK RNPSIVSSRK TSPNEESATH  240
SPFVQSHFIF TVRSYCLSQG FLRLIKQFAH ANGLTKKKSL IIRDERQRSW DLRLVTYGSQ  300
VFIKGGWSEF HVANDLKVGD HVMFEVVTNG EQPIWKFHGK FSHFSNLFFA STTFFFVICT  360
MTLYCSSSKG LPCAEAATHK PLGQSHFICT IKPYCLTYDF FYIPKEFVLE NGLTNKKCDV  420
IIRDEWKRSW NVKIRSFGSD VCIRVGWHEF RDANCLKEGD CVKFEVVSNG NKPIWKFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168740.10.0PREDICTED: B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1S4BWV00.0A0A1S4BWV0_TOBAC; B3 domain-containing protein REM10-like isoform X1
TrEMBLA0A1U7VE490.0A0A1U7VE49_NICSY; B3 domain-containing protein REM10-like isoform X1
STRINGXP_009766332.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-39B3 family protein