PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00066g02069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 478aa MW: 55513.2 Da PI: 8.3014 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.4 | 1.3e-13 | 2 | 74 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f++ +g++ee ++ + + g++W vkl ++++ l++GW +F+++++L+ gD +vF+++g++ef v++f++ Peinf101Scf00066g02069.1 2 IPIGFLKFLNGEEEE-QEHAVLRRCGKKWLVKL--KGGR----LEDGWPKFAEEHDLQLGDLLVFRHEGNMEF--EVTIFDS 74 788888766666555.57888899*********..7777....*************************99999..9999986 PP | |||||||
2 | B3 | 48.1 | 2.1e-15 | 131 | 219 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ++s+ l++g l+lp +fa+++g+ +++ l+++de+ rsW+++l + + g+ ++l+ W eF an+Lk gD ++F+++ ++ Peinf101Scf00066g02069.1 131 IRSYLLTKGYLRLPTRFARKNGLFD-KKFALIIRDERQRSWNFRL--NTSHGQvHMLG-RWGEFRAANDLKLGDNIMFEVVT-NG 210 68999****************7764.5689***************..88888846666.9*******************876.55 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++ k+++ Peinf101Scf00066g02069.1 211 EKPIWKFVD 219 556666655 PP | |||||||
3 | B3 | 56.4 | 5.6e-18 | 251 | 330 | 5 | 89 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++s+ l++g l+l k+fa ++g+ k++ l+++de+ rsW+++l +++++++++GW+eF an+Lk+gD v+F+++ + + Peinf101Scf00066g02069.1 251 TVRSYCLSQGFLRLIKQFAHANGLTKKK--SLIIRDERQRSWDLRL--VTYGSQVFIKGGWSEFHVANDLKVGDHVMFEVVTN-G 330 56899*****************999766..6***************..999999*************************8764.3 PP | |||||||
4 | B3 | 52.4 | 9.4e-17 | 390 | 470 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++ l+ + +++pk+f+ e+g+ + ++ +++++de+ rsW+vk+ r ++ + ++ GW eF +an LkegD v F+++++ Peinf101Scf00066g02069.1 390 TIKPYCLTYDFFYIPKEFVLENGLTN-KKCDVIIRDEWKRSWNVKI--RSFGSDVCIRVGWHEFRDANCLKEGDCVKFEVVSNG 470 567899999*************8885.4569***************..888889*************************88753 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.648 | 1 | 75 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.94E-15 | 2 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.2E-10 | 2 | 74 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 2 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.09E-11 | 2 | 73 | No hit | No description |
SMART | SM01019 | 1.6E-6 | 6 | 75 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-15 | 121 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-16 | 123 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.73 | 126 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-13 | 127 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-13 | 131 | 218 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.09E-11 | 131 | 205 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-19 | 245 | 337 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-18 | 246 | 338 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.3E-14 | 247 | 340 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 247 | 340 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-15 | 250 | 332 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.95E-12 | 253 | 325 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 384 | 473 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-18 | 384 | 477 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.5E-14 | 386 | 475 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.801 | 386 | 478 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-14 | 390 | 471 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.88E-13 | 391 | 474 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
KIPIGFLKFL NGEEEEQEHA VLRRCGKKWL VKLKGGRLED GWPKFAEEHD LQLGDLLVFR 60 HEGNMEFEVT IFDSSQCGRE YTEYLQEEEE EEEETSKKDE SNGSEIMLPS KANFHSAEAA 120 TSGQSHFEWT IRSYLLTKGY LRLPTRFARK NGLFDKKFAL IIRDERQRSW NFRLNTSHGQ 180 VHMLGRWGEF RAANDLKLGD NIMFEVVTNG EKPIWKFVDK RNPSIVSSRK TSPNEESATH 240 SPFVQSHFIF TVRSYCLSQG FLRLIKQFAH ANGLTKKKSL IIRDERQRSW DLRLVTYGSQ 300 VFIKGGWSEF HVANDLKVGD HVMFEVVTNG EQPIWKFHGK FSHFSNLFFA STTFFFVICT 360 MTLYCSSSKG LPCAEAATHK PLGQSHFICT IKPYCLTYDF FYIPKEFVLE NGLTNKKCDV 420 IIRDEWKRSW NVKIRSFGSD VCIRVGWHEF RDANCLKEGD CVKFEVVSNG NKPIWKFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168740.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | A0A1S4BWV0 | 0.0 | A0A1S4BWV0_TOBAC; B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | A0A1U7VE49 | 0.0 | A0A1U7VE49_NICSY; B3 domain-containing protein REM10-like isoform X1 | ||||
STRING | XP_009766332.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 3e-39 | B3 family protein |