PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00060g09028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB
Protein Properties Length: 1067aa    MW: 118613 Da    PI: 5.124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00060g09028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-1962108148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Peinf101Scf00060g09028.1  62 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 108
                               799****************************9.************986 PP
2Myb_DNA-binding64.91.5e-20114160148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Peinf101Scf00060g09028.1 114 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 160
                               79******************************.*************97 PP
3Myb_DNA-binding51.13.2e-16166208145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+   ++++ gRt++++k++w+
  Peinf101Scf00060g09028.1 166 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNSIKNHWN 208
                               579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.47157108IPR017930Myb domain
SuperFamilySSF466897.18E-1658114IPR009057Homeodomain-like
SMARTSM007171.0E-1561110IPR001005SANT/Myb domain
PfamPF002492.2E-1662108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2363120IPR009057Homeodomain-like
CDDcd001672.15E-1465108No hitNo description
PROSITE profilePS5129433.956109164IPR017930Myb domain
SuperFamilySSF466897.86E-32111207IPR009057Homeodomain-like
SMARTSM007175.3E-19113162IPR001005SANT/Myb domain
PfamPF002492.1E-18114160IPR001005SANT/Myb domain
CDDcd001678.59E-17116160No hitNo description
Gene3DG3DSA:1.10.10.601.3E-27121167IPR009057Homeodomain-like
SMARTSM007173.2E-15165213IPR001005SANT/Myb domain
PROSITE profilePS5129419.814165215IPR017930Myb domain
PfamPF002491.4E-14166209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-22168215IPR009057Homeodomain-like
CDDcd001671.02E-11168208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MCFAFITPLV FWNFLKPTSV MNRLFESDSV KFSKYSNSLW NSLSSGANFN RRTSGPTRRS  60
TKGQWTPEED EILRKAVQRF KGKNWKKIAE CFKDRTDVQC LHRWQKVLNP ELVKGPWSKE  120
EDEVIVELVK KYGPKKWSTI AQHLPGRIGK QCRERWHNHL NPSINKEAWT QEEELTLIRA  180
HQIYGNKWAE LTKYLPGRTD NSIKNHWNSS VKKKLDSYLA SGLLAQFPAL PTVNHQNQSI  240
PSSVKLQQSS EDDSVRKEGT EMEEVSECSQ GSNLAGCSQS TSDMGNRFVH TREDRKLLED  300
SNYRMDPSSS AAPCSEYYTP AFDDITFSME EVPSELSESK FLEQNLSHEW RTSMGKDWQF  360
NPDDIPDISP LELMQESSGL FMQCLTGNGN HDMVTFPQKN AMSFGTTTNM GGMVVGLGKP  420
TEMFTSVDNC RMVYPEAGIP QCFSSETGMN GVDETADSLI YQSSNYQISE ADMSIEKCNP  480
LCSDVMESQP FSVPSQFSSE QSSSMFGTAS NQFHDLSHGN PALESHTSKC DAFLYPVESG  540
TPCDNIMNDP LLKEQLHRTE DSVQLVSVND FSSTPPSTLQ TRPLVNENLP VPEDQKDAGA  600
LCYEPPRFPS LDVPFFSCDL IQSGTDAQQE YSPLGIRQLM MSSVNCLTPF RLWDSPSRDG  660
SPDALLRSAA KTFTSTPSIL KKRHRDLVSP LSEKRCEKKL ESDFRREAFS DLAKDFSRLD  720
VMVDESANEK ATISSVTADQ VLELRASSED KENISPTEDG RKEEDKGHNG LSSDGTSERQ  780
LDGADVHYKE HGTREGKRVG ANDAKGKIKQ PSGVLVELNT SDLFFSPDRF GAKDRATNLS  840
NKALGNQYAR RLEAASNQGS VSSSFETSCL SVICSPRIRG KKDGSSFIIT TSMQSATTST  900
ALDNSAETSG NGVGAETVNI SGETPYKRSF ESPSAWKSPW FINSFMSSPR LDTELTFEDL  960
ALFLSPGERS YDAIGLMKQL SEQTAGAFAD AQEVLGGETP ESIIRGRNSK NQKANENHSL  1020
LSANAVSERR TLDFSECGSP GKGKDAEICT NDRSFSSPSS YLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-69622156159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-69622156159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561230.0AB056123.1 Nicotiana tabacum NtmybA2 mRNA for Myb, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782666.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A1U7WZ810.0A0A1U7WZ81_NICSY; myb-related protein 3R-1
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein