PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00055g18007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 433aa    MW: 49259 Da    PI: 6.7608
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00055g18007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.42.5e-120333862347
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal..... 81 
                               ++lL++cAe +s +d+++a++l++ ls+++sp gd+++Rl++ ft+AL+ rl+r   + ++a  +s+ ++ + +e++++      
  Peinf101Scf00055g18007.1  33 RQLLISCAELISRSDFSAANRLITILSTNSSPFGDSTERLVHQFTRALSLRLNRYIISSSSATVTSSVTPLHNVENISSNdssla 117
                               89****************************************************5555555555555554554444444434444 PP

                      GRAS  82 ..kl....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                                 +     +++v+P+++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R  +pp+lRiTg g+    + ++l+
  Peinf101Scf00055g18007.1 118 llQSsylsLNQVTPFIRFSQLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLR 197
                               44115567***********************998799***********************9.999**********....****** PP

                      GRAS 160 etgerLakfAeelgvpfefnvl.vakrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                               +tg+rLakfA++lg++f+f++l ++++ +d ++   +++ + p+E+laVn+v+ lhr+l+++ +l+     +L+ +ks++Pkvv+
  Peinf101Scf00055g18007.1 198 RTGDRLAKFAHSLGLRFQFHPLlITNNENDHDPsiiSSILLLPDETLAVNCVFYLHRILKDREKLRV----FLHRIKSMNPKVVT 278
                               *********************9644455555550015556777****************88888888....************** PP

                      GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                               v+e+ea+hn++ Fl+rf+eal+yy+a+fdslea+lp+ s+er++vE++++grei ++va+eg++r+erhe++++W+ +l+++GF+
  Peinf101Scf00055g18007.1 279 VAEREANHNHPLFLQRFVEALDYYAAVFDSLEATLPPSSRERMTVEQVWFGREIIDIVAAEGEKRKERHERFRSWEVMLRSCGFS 363
                               ************************************************************************************* PP

                      GRAS 326 pvplsekaakqaklllrkvk.sd 347
                               +vpls +a +qaklllr ++ s+
  Peinf101Scf00055g18007.1 364 NVPLSPFALSQAKLLLRLHYpSE 386
                               ******************99655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.6436392IPR005202Transcription factor GRAS
PfamPF035148.7E-11833386IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLGSFGSSSQ SHDEEDEHHQ RPRFTTSPAI QIRQLLISCA ELISRSDFSA ANRLITILST  60
NSSPFGDSTE RLVHQFTRAL SLRLNRYIIS SSSATVTSSV TPLHNVENIS SNDSSLALLQ  120
SSYLSLNQVT PFIRFSQLTA NQAILEAIND NQQAIHIVDF DINHGVQWPP LMQALADRYP  180
PPTLRITGTG NDLDTLRRTG DRLAKFAHSL GLRFQFHPLL ITNNENDHDP SIISSILLLP  240
DETLAVNCVF YLHRILKDRE KLRVFLHRIK SMNPKVVTVA EREANHNHPL FLQRFVEALD  300
YYAAVFDSLE ATLPPSSRER MTVEQVWFGR EIIDIVAAEG EKRKERHERF RSWEVMLRSC  360
GFSNVPLSPF ALSQAKLLLR LHYPSEEDSV YQILLLYQRP TIVSFCFFLS ALINFMEEGL  420
GSEILGHGCM RNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-563938626352Protein SCARECROW
5b3h_A1e-563938625351Protein SCARECROW
5b3h_D1e-563938625351Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765072.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-118SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1S3XTB60.0A0A1S3XTB6_TOBAC; scarecrow-like protein 18
TrEMBLA0A1U7VAL70.0A0A1U7VAL7_NICSY; scarecrow-like protein 18
STRINGXP_009765072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-113GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]