PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00053g05013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 22062.5 Da PI: 4.5454 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42 | 1.7e-13 | 23 | 109 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffkv +++++++++ +p +f+ e+g + + + le +sg W+vkl +++ g+ +l++GW++F + + g f++F+++ Peinf101Scf00053g05013.1 23 FFKVVLSPHASTLH---IPDEFTMEYGP--NLGDLVLLEVPSGAIWKVKL--ENSNGTAWLKEGWNQFKEYYSIGCGYFLLFQYN 100 78888777777766...*********84..4788999999**********..********************************* PP SSSEE..EEEE CS B3 86 grsefelvvkv 96 g+s f v + Peinf101Scf00053g05013.1 101 GNSHF--SVFI 109 99999..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 16 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.012 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-22 | 21 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.16E-17 | 22 | 111 | No hit | No description |
SMART | SM01019 | 7.6E-12 | 23 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-10 | 23 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MVKRCWQGEP EPVNSSERVP SHFFKVVLSP HASTLHIPDE FTMEYGPNLG DLVLLEVPSG 60 AIWKVKLENS NGTAWLKEGW NQFKEYYSIG CGYFLLFQYN GNSHFSVFIF DLSASEIEYP 120 SGPNEDMTPE NVVNTVGDAS HRKDVGGPET ENNSCDDTVD DLSRNKTAGD NEMKARRVTL 180 GDGGHSGEGE LLRTRLIM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016480126.1 | 8e-86 | PREDICTED: B3 domain-containing protein At4g34400-like isoform X1 | ||||
TrEMBL | A0A1S4AU63 | 2e-84 | A0A1S4AU63_TOBAC; B3 domain-containing protein At4g34400-like isoform X1 | ||||
STRING | XP_009797235.1 | 2e-80 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13290 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-23 | B3 family protein |