PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00049g16020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24584.3 Da    PI: 9.8126
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00049g16020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k+y +
  Peinf101Scf00049g16020.1 16 KIEMKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVYSF 63
                              68889999**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-27783IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-31766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.432767IPR002100Transcription factor, MADS-box
CDDcd002657.62E-33875No hitNo description
PRINTSPR004049.1E-18929IPR002100Transcription factor, MADS-box
PfamPF003192.4E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAKKPSMGRQ RIKIAKIEMK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV  60
YSFGHPNVES IIDRFFSRNP HPISNRLHIV EAHRHANVLE LNLKITQILG ELEVEKKKGE  120
TLDQMRKTNQ SQYWWEAPIG ELALHELEQL KESMEDLKKN VTTQATKLMI HENSNTSSFL  180
AMNGVGIFDN YDLKPVIAAS SNPHNHTFGY DHGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15792187MEF2C
5f28_B3e-15792187MEF2C
5f28_C3e-15792187MEF2C
5f28_D3e-15792187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587873.11e-121PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK29e-59AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A1S3YG191e-119A0A1S3YG19_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009587873.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-55AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]